View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21292_low_1 (Length: 377)
Name: NF21292_low_1
Description: NF21292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21292_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 48250706 - 48250909
Alignment:
| Q |
11 |
aagcaaagggtggtttctctattttcctcaaacaaacaaaaacattgaatcttaattcttaacataggaaaa-aaggataacagtgaagaaaagtgagag |
109 |
Q |
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| T |
48250706 |
aagcaaagggtggtttctctattttcctcaaacaaacaaaaacattgaatcttaattcttaacataggaaaaaaaggataacagtgaagaaaagtgagag |
48250805 |
T |
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| Q |
110 |
acaatggcggttgcagcaagtgcaggcacagtgttagttcctcatcggctattgacaaccaccaacgttactcgctgctctgctttgccttatcttcctc |
209 |
Q |
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| T |
48250806 |
acaatggcggttgcagcaagtgcaggcacagtgttagttcctcatcggctattgacaaccaccaacgttactcgctgctctgctttgccttatcttcctc |
48250905 |
T |
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| Q |
210 |
ctcg |
213 |
Q |
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|||| |
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| T |
48250906 |
ctcg |
48250909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 48251026 - 48251074
Alignment:
| Q |
312 |
agcttatattttcgtttaagctaatataatttgttttcataagctatct |
360 |
Q |
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| T |
48251026 |
agcttatattttcgtttaagctaatataatttgttttcataagctatct |
48251074 |
T |
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