View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21292_low_2 (Length: 289)
Name: NF21292_low_2
Description: NF21292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21292_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 13357923 - 13357811
Alignment:
| Q |
95 |
aaagcataacttgtttttacataatatagtttagagtcttagagaataacatgcgatgtaaaacacaaataatataaattatatttgtaaagaagaaaaa |
194 |
Q |
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| T |
13357923 |
aaagcataacctgattttacataataaagatcagtgtcttagagaatagtatgcgatgtaaaacaaaaataatataaattatatttgtaaagaagagaaa |
13357824 |
T |
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| Q |
195 |
gatttcctttttc |
207 |
Q |
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| T |
13357823 |
gatctcctttttc |
13357811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 13329613 - 13329546
Alignment:
| Q |
16 |
atgattacggaacggtggtagatagagcattaaaagatataaattaataaacattttttattcttgtt |
83 |
Q |
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| T |
13329613 |
atgattacggaacggtggtagatagagcattaaaagatataaattaataaacattttttattcttgtt |
13329546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 13329358 - 13329310
Alignment:
| Q |
223 |
ttgtggtttcatgaacaatgatttaagcatggaaggagcatgaatattg |
271 |
Q |
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| T |
13329358 |
ttgtggtttcatgaacaatgatttaagcatggaaggagcatgaatattg |
13329310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 13357794 - 13357746
Alignment:
| Q |
223 |
ttgtggtttcatgaacaatgatttaagcatggaaggagcatgaatattg |
271 |
Q |
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| T |
13357794 |
ttgtggtttcatgaacaatgattaaagcatggaaagagcataaatattg |
13357746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 13377285 - 13377330
Alignment:
| Q |
125 |
ttagagtcttagagaataacatgcgatgtaaaacacaaataatata |
170 |
Q |
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| T |
13377285 |
ttagaatcttagagaatatcatgtgatgtaaaacacaaataatata |
13377330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 13377394 - 13377438
Alignment:
| Q |
224 |
tgtggtttcatgaacaatgatttaagcatggaaggagcatgaata |
268 |
Q |
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| T |
13377394 |
tgtggtttcatgaactgtgattgaagcatggaaggagtatgaata |
13377438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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