View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_high_11 (Length: 341)
Name: NF21293_high_11
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 183 - 330
Target Start/End: Complemental strand, 39518650 - 39518503
Alignment:
| Q |
183 |
atttggtatcctatttggaacttcaaaaccaaaccttatgttacaaattacgacacaaactgataaccacaatcataattcgaaagatgacgcccacatc |
282 |
Q |
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| T |
39518650 |
atttggtatcctatttggaacttcaaaaccaaaccttatgttacaaattacgacacaaactgataaccacaatcataattcgaaagatgacgcccacatc |
39518551 |
T |
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| Q |
283 |
aacactttatttaaataagtgtgctaacttaatataatggaccttcat |
330 |
Q |
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| T |
39518550 |
aacactttatttaaataagtatgctaacttaataaaatggaccttcat |
39518503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 39518804 - 39518648
Alignment:
| Q |
1 |
ttaaatttgggaaatcatgcaatcnnnnnnnaacatttgctgaatcccaaacccagtattcgttcagtaattgacagtatggattaataccac---taca |
97 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
39518804 |
ttaaatttgggaaatcatgcaatctttttttaacatttgctgaatcccaaacccagtgttcgttcagtaattgacagtatggattaataccaccactaca |
39518705 |
T |
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| Q |
98 |
ccctcactctttagtttaccaatacttggagcaaaccacagataacataactgaatt |
154 |
Q |
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| T |
39518704 |
ccctcactctttagtttaccaatacttggagcaaaccacagataacataactgaatt |
39518648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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