View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21293_high_13 (Length: 329)

Name: NF21293_high_13
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21293_high_13
NF21293_high_13
[»] chr1 (1 HSPs)
chr1 (19-329)||(8087703-8088015)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 8088015 - 8087703
Alignment:
Q  19 acgtgtttgttaatcgtccttagtttcgattttcaaatatt--aagactttttggtgtatcagaatagagttatagagacaaaatcattaaattttaaag 116  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8088015 acgtgtttgttaatcgtccttagtttcgattctcaaatattgtaagactttttggtgtatcagaatagagttatagagacaaaatcattaaattttaaag 8087916  T
Q  117 caaccatttatccattacaagattgtttctgattacctcagaatttcattcttaatgcaacattattataccacttccaaaggaaaaaagtaagcataca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8087915 caaccatttatccattacaagattgtttctgattacctcagaatttcattcttaatgcaacattattataccacttccaaaggaaaaaagtaagcataca 8087816  T
Q  217 ccatctatatactttctacacgagcttccaagttccaatcatatttaactatcatgtcaagtcaagtatgatattactagaacttctttaaacctatata 316  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8087815 ccatctatatactttctacacaagcttccaagttccaatcatatttaactatcatgtcaagtcaagtatgatattactagaacttctttaaacctatata 8087716  T
Q  317 gcacttatacttc 329  Q
    |||||||||||||    
T  8087715 gcacttatacttc 8087703  T

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