View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_high_2 (Length: 511)
Name: NF21293_high_2
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_high_2 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 160226 - 160705
Alignment:
| Q |
19 |
ggtgtgaaaaatgaagctgtaaaaaatggtaaggaatttgtaggtattcattccagtggtaaaagatttgacattactctcgtggataaggaaattccta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160226 |
ggtgtgaaaaatgaagctgtaaaaaatggtaaggaagttgtaggtattcattccagtggtaaaagatttgacattactctcgtggataaggaaattccta |
160325 |
T |
|
| Q |
119 |
tcatgaataggattgaggtacatatttatcttgattatgttttccttctaattttgttatgtataatacgttgaaa-gaaggatgaaaatgtatgtttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
160326 |
tcatgaataggattgaggtacatatttatcttgattatgttttccttctaattttgttatgtataatacgttgaaaagaaggatgaaaatgcatgtttca |
160425 |
T |
|
| Q |
218 |
tgtgtatttatatttaaaataagattcgattgttgggtgtttt-ttatgcaggcaactaagaaactgcgatcaattggtattcgcagcaagattgttggt |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |
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| T |
160426 |
tgtgtatttatatttaaaataagattcaattgttgggtttttttttatgcaggcaactaagaaactgtgatcaattcgtattcgtagcaagattgttggt |
160525 |
T |
|
| Q |
317 |
gtgtcgtcgtgtacagaaacagaaaaacaagaatttatgaaagctgggatagatgactatcaagtaaaaccattgaccatattggtgtacttaattcgat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160526 |
gtgtcgtcgtgtacagaaacagaaaaacaagaatttatgaaagctgggatagatgactatcaagtaaaaccattgaccatattggtgtacttaattcgat |
160625 |
T |
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| Q |
417 |
tcttaatgtcgtaaaagctggcaaatagtatgtcctttgtgaatgatgttgtaaaaatgtaagagaaactagacatttat |
496 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160626 |
tcttgatgtcgtaaaagctggcaaatagtatgtcctttgtgaatgatgttgtaaaaatgtaagagaaactagacatttat |
160705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 144 - 471
Target Start/End: Complemental strand, 39635855 - 39635529
Alignment:
| Q |
144 |
ttatcttgattatgttttccttctaattttgttatgtataatacgttgaaa-gaaggatgaaaatgtatgtttcatgtgtatttatatttaaaataagat |
242 |
Q |
| |
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||||||||||| |||| |||| ||| ||||||||||||||||| ||||| || ||||||||||| | ||| |||||| ||||||||||| ||| |||| |
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| T |
39635855 |
ttatcttgattctgttctcctattaactttgttatgtataatacaatgaaaagagggatgaaaatgcacgttccatgtgcatttatatttataatgagat |
39635756 |
T |
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| Q |
243 |
tcgattgttgggtgtttttta-tgcaggcaactaagaaactgcgatcaattggtattcgcagcaagattgttggtgtgtcgtcgtgtacagaaacagaaa |
341 |
Q |
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||| ||||||| | ||||||| |||||||||| |||||||||||||| || ||||| | |||| ||||||||||||||| |||||||| ||| |||||| |
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| T |
39635755 |
tcgcttgttggattttttttaatgcaggcaaccaagaaactgcgatcgatgggtatcggtagcatgattgttggtgtgtcatcgtgtactgaagcagaaa |
39635656 |
T |
|
| Q |
342 |
aacaagaatttatgaaagctgggatagatgactatcaagtaaaaccattgaccatattggtgtacttaattcgattcttaatgtcgtaaaagctggcaaa |
441 |
Q |
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|||||||||||||| |||| ||||| |||| |||||||| |||||||||||| |||||||| |||||||| |||||| ||| ||||||||| |||| |
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| T |
39635655 |
aacaagaatttatggaagcggggattaatgattatcaagtgaaaccattgacc--attggtgtgcttaattccattcttgatgctgtaaaagctagcaag |
39635558 |
T |
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| Q |
442 |
tagtatgtcctttgtgaatgatgttgtaaa |
471 |
Q |
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||| ||| ||||||| |||||| |||||| |
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| T |
39635557 |
tagcatg-gctttgtggatgatgctgtaaa |
39635529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 39636025 - 39635897
Alignment:
| Q |
19 |
ggtgtgaaaaatgaagctgtaaaaaatggtaaggaatttgtaggtattcattccagtggtaaaagatttgacattactctcgtggataaggaaattccta |
118 |
Q |
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|||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| || |||| |||||||||| |||| |||| ||||||||||||| |||| |
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| T |
39636025 |
ggtgtgaaaagtgaagctgtaaaaaatggtaaagaagctgtagatatccattgcaatggtcaaagatttgatattattctcatggataaggaaatgccta |
39635926 |
T |
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| Q |
119 |
tcatgaataggattgaggtacatatttat |
147 |
Q |
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|||||||| ||||||||||||||| |||| |
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| T |
39635925 |
tcatgaatgggattgaggtacatagttat |
39635897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 23348623 - 23348422
Alignment:
| Q |
19 |
ggtgtgaaaaatgaagctgtaaaaaatggtaaggaatttgtaggtattcattccagtggtaaaagatttgacattactctcgtggataaggaaattccta |
118 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| ||||| || ||||| || || ||||||||||||||| |||||||||||||||||| |||| |
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| T |
23348623 |
ggtgtgaaaaatgaagctgtaaaaaatggcaaggaagctgtagataatcattg--gtagtcaaagatttgacattattctcgtggataaggaaatgccta |
23348526 |
T |
|
| Q |
119 |
tcatgaataggattgaggtacatatttatcttgattatgttttccttctaattttgttatgtataatacgttg-aaagaaggatgaaaatgtatgtttca |
217 |
Q |
| |
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||||| || ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| |||||||| ||||||| |||||||| |
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| T |
23348525 |
tcatgtatgggattgaggtacatatttatcttgattctgttttccttctaatttttttctgtataatacgttgaaaagaaggttgaaaatacatgtttca |
23348426 |
T |
|
| Q |
218 |
tgtg |
221 |
Q |
| |
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|||| |
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| T |
23348425 |
tgtg |
23348422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 406 - 496
Target Start/End: Complemental strand, 23348421 - 23348331
Alignment:
| Q |
406 |
cttaattcgattcttaatgtcgtaaaagctggcaaatagtatgtcctttgtgaatgatgttgtaaaaatgtaagagaaactagacatttat |
496 |
Q |
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||||||||||||||| |||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
23348421 |
cttaattcgattcttgatgtcgtaaaagttggcaagtagcatgtccttcgtgaatgatgttgtaaaaatgtaggagaaactagacttttat |
23348331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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