View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21293_high_24 (Length: 250)

Name: NF21293_high_24
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21293_high_24
NF21293_high_24
[»] chr8 (1 HSPs)
chr8 (1-242)||(2112447-2112689)
[»] chr1 (1 HSPs)
chr1 (166-212)||(3354649-3354695)
[»] chr5 (2 HSPs)
chr5 (163-238)||(14950921-14950990)
chr5 (145-209)||(6239219-6239282)
[»] chr7 (1 HSPs)
chr7 (145-199)||(30980414-30980468)
[»] chr6 (1 HSPs)
chr6 (163-211)||(25149523-25149571)
[»] chr4 (1 HSPs)
chr4 (144-204)||(52157147-52157206)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2112689 - 2112447
Alignment:
Q  1 attcacattacaaaggcatataagccggaattgattaacaaataattcaaataattaatcaaataatttacatttctcacatattaaagaataatgagtg 100  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |    
T  2112689 attcacattacaaaggcatagaagccgaaattgattaacaaataattcaaataattaatcacataatttacatttctcacatattaaaaaataatgagcg 2112590  T
Q  101 attttataaaaaagaatagtaaaggatatgaaagg-nnnnnnnncattaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttt 199  Q
    |||||||||||||||||||||||||||||||||||         |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  2112589 attttataaaaaagaatagtaaaggatatgaaaggaaaaaaaaacattaatgttgtattgtttttataaattaacatataataaaacacaaatatatttt 2112490  T
Q  200 tcaaagtgacatactgtataataaaatacagagggagtattat 242  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  2112489 tcaaagtgacatactgtataataaaatacagagagagtattat 2112447  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 3354695 - 3354649
Alignment:
Q  166 taaattaacatataataaaacacaaatatatttttcaaagtgacata 212  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  3354695 taaagtaacatatattaaaacacaaatatatttttcaaagtgacata 3354649  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 14950990 - 14950921
Alignment:
Q  163 ttgtaaattaacatataataaaacacaaatatatttttcaaagtgacatactgtataataaaatacagagggagta 238  Q
    ||||||| | |||||| |||||||| ||||| ||||||||||||||     |||||||||||||||||||||||||    
T  14950990 ttgtaaagtgacatattataaaacataaata-atttttcaaagtga-----tgtataataaaatacagagggagta 14950921  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 6239282 - 6239219
Alignment:
Q  145 attaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttttcaaagtgac 209  Q
    |||||||| | |||| | ||||||| | || ||||||||||||||||||| ||||||||||||||    
T  6239282 attaatgaggcattgatattgtaaagtgacttataataaaacacaaatat-tttttcaaagtgac 6239219  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 30980414 - 30980468
Alignment:
Q  145 attaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttt 199  Q
    ||||||||||||||  | ||||||| ||||||||||| |||||||||||| ||||    
T  30980414 attaatgatgtatttgtattgtaaagtaacatataatgaaacacaaatatttttt 30980468  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 25149523 - 25149571
Alignment:
Q  163 ttgtaaattaacatataataaaacacaaatatatttttcaaagtgacat 211  Q
    ||||||| | ||||||||| |||||||||||| |||| |||||||||||    
T  25149523 ttgtaaagtgacatataatcaaacacaaatattttttccaaagtgacat 25149571  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 52157147 - 52157206
Alignment:
Q  144 cattaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttttcaaa 204  Q
    ||||||||||| |||| | |||| || | |||||||||||||||||||||| |||||||||    
T  52157147 cattaatgatgcattgatattgtgaagtgacatataataaaacacaaatat-tttttcaaa 52157206  T

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