View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21293_high_5 (Length: 448)

Name: NF21293_high_5
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21293_high_5
NF21293_high_5
[»] chr4 (44 HSPs)
chr4 (185-434)||(55669807-55670057)
chr4 (1-93)||(55669609-55669701)
chr4 (185-250)||(35808372-35808437)
chr4 (186-249)||(27839283-27839346)
chr4 (185-250)||(26040336-26040401)
chr4 (185-253)||(51290498-51290566)
chr4 (185-251)||(41956188-41956254)
chr4 (185-249)||(2362699-2362763)
chr4 (185-249)||(34016693-34016757)
chr4 (186-251)||(34316697-34316762)
chr4 (185-249)||(23765646-23765710)
chr4 (186-250)||(31755007-31755071)
chr4 (64-120)||(47188771-47188827)
chr4 (186-247)||(31487790-31487851)
chr4 (185-249)||(19876160-19876224)
chr4 (61-120)||(34316829-34316888)
chr4 (61-120)||(45688687-45688746)
chr4 (186-245)||(45688812-45688871)
chr4 (195-245)||(16559975-16560025)
chr4 (65-119)||(54339061-54339115)
chr4 (186-248)||(54339181-54339243)
chr4 (78-120)||(55669700-55669742)
chr4 (196-249)||(19328724-19328777)
chr4 (192-249)||(26831763-26831820)
chr4 (185-249)||(20811331-20811395)
chr4 (63-119)||(26040467-26040523)
chr4 (186-246)||(30475494-30475554)
chr4 (185-249)||(31168202-31168266)
chr4 (185-249)||(32131210-32131274)
chr4 (61-116)||(2362573-2362628)
chr4 (65-120)||(50514719-50514774)
chr4 (186-249)||(51266993-51267056)
chr4 (66-120)||(23765527-23765581)
chr4 (186-248)||(50514592-50514653)
chr4 (66-115)||(30475374-30475423)
chr4 (186-241)||(53566935-53566990)
chr4 (70-120)||(20456522-20456572)
chr4 (195-245)||(54400286-54400336)
chr4 (64-105)||(50620715-50620756)
chr4 (64-104)||(11086379-11086419)
chr4 (64-116)||(27976844-27976896)
chr4 (64-120)||(41956319-41956375)
chr4 (63-116)||(45088020-45088069)
chr4 (88-120)||(51266895-51266927)
[»] chr1 (42 HSPs)
chr1 (185-250)||(34874635-34874700)
chr1 (186-251)||(41147450-41147515)
chr1 (185-250)||(49508707-49508772)
chr1 (186-249)||(2125681-2125744)
chr1 (185-253)||(11385780-11385848)
chr1 (186-250)||(22346210-22346274)
chr1 (185-249)||(27209695-27209759)
chr1 (64-116)||(27209828-27209880)
chr1 (187-250)||(7190448-7190511)
chr1 (191-249)||(43433849-43433907)
chr1 (185-250)||(4940713-4940778)
chr1 (64-120)||(22346340-22346396)
chr1 (185-249)||(28850884-28850948)
chr1 (186-250)||(29966892-29966956)
chr1 (186-249)||(42607298-42607361)
chr1 (192-249)||(24140848-24140904)
chr1 (185-229)||(932151-932195)
chr1 (64-120)||(7190578-7190634)
chr1 (186-250)||(47655344-47655408)
chr1 (185-247)||(8244156-8244219)
chr1 (186-249)||(31975556-31975619)
chr1 (186-245)||(40845320-40845379)
chr1 (185-250)||(11386049-11386114)
chr1 (185-250)||(32213862-32213927)
chr1 (185-252)||(50295404-50295471)
chr1 (66-116)||(43433724-43433774)
chr1 (193-250)||(5945496-5945553)
chr1 (185-250)||(45721820-45721884)
chr1 (63-120)||(49508836-49508893)
chr1 (186-250)||(26469555-26469619)
chr1 (186-250)||(33930035-33930099)
chr1 (186-245)||(52396511-52396571)
chr1 (217-247)||(8772511-8772541)
chr1 (66-120)||(47895283-47895337)
chr1 (63-120)||(4940843-4940900)
chr1 (212-245)||(26060288-26060321)
chr1 (191-248)||(30222993-30223050)
chr1 (185-249)||(6170525-6170589)
chr1 (64-112)||(8244044-8244092)
chr1 (61-101)||(26701492-26701532)
chr1 (213-245)||(38680885-38680917)
chr1 (64-104)||(44603735-44603775)
[»] chr8 (21 HSPs)
chr8 (185-253)||(19389283-19389351)
chr8 (186-248)||(45338073-45338135)
chr8 (185-250)||(4990001-4990066)
chr8 (186-250)||(21016033-21016097)
chr8 (186-249)||(5129433-5129496)
chr8 (192-251)||(21016309-21016368)
chr8 (185-250)||(26672858-26672922)
chr8 (65-120)||(4989884-4989939)
chr8 (63-120)||(3174402-3174459)
chr8 (186-251)||(35930205-35930270)
chr8 (186-250)||(6939227-6939291)
chr8 (206-250)||(18808956-18809000)
chr8 (62-105)||(26672735-26672778)
chr8 (217-250)||(22488765-22488798)
chr8 (192-251)||(19976465-19976525)
chr8 (65-104)||(27982417-27982456)
chr8 (65-104)||(28039719-28039758)
chr8 (68-112)||(18068241-18068285)
chr8 (185-217)||(18069030-18069062)
chr8 (62-102)||(18131299-18131339)
chr8 (185-245)||(26195354-26195414)
[»] chr2 (34 HSPs)
chr2 (185-250)||(765126-765191)
chr2 (186-250)||(39401511-39401575)
chr2 (185-252)||(1321236-1321303)
chr2 (187-253)||(27495193-27495259)
chr2 (290-371)||(9215041-9215122)
chr2 (192-251)||(17056033-17056092)
chr2 (192-251)||(17068480-17068539)
chr2 (192-251)||(17074463-17074522)
chr2 (63-120)||(6999148-6999205)
chr2 (185-245)||(16361634-16361694)
chr2 (185-245)||(39085773-39085833)
chr2 (185-252)||(2966608-2966675)
chr2 (192-251)||(17095042-17095101)
chr2 (186-241)||(17603880-17603935)
chr2 (200-251)||(23685638-23685689)
chr2 (185-247)||(862657-862719)
chr2 (186-235)||(33726449-33726498)
chr2 (63-119)||(2966486-2966542)
chr2 (190-249)||(44299658-44299717)
chr2 (186-248)||(13997882-13997944)
chr2 (87-120)||(862559-862592)
chr2 (185-250)||(33864423-33864488)
chr2 (185-249)||(6999270-6999334)
chr2 (213-245)||(9991421-9991453)
chr2 (206-249)||(4023355-4023398)
chr2 (186-241)||(35445275-35445330)
chr2 (67-120)||(1321117-1321171)
chr2 (61-103)||(6084650-6084692)
chr2 (66-120)||(39085898-39085952)
chr2 (217-246)||(8033381-8033410)
chr2 (65-105)||(1870462-1870502)
chr2 (88-120)||(16361537-16361569)
chr2 (186-250)||(41436547-41436611)
chr2 (186-250)||(44173188-44173252)
[»] chr7 (30 HSPs)
chr7 (186-248)||(40763318-40763380)
chr7 (185-249)||(48454799-48454863)
chr7 (189-251)||(24359683-24359745)
chr7 (185-251)||(29034755-29034821)
chr7 (185-250)||(43567482-43567547)
chr7 (185-249)||(8292813-8292877)
chr7 (186-248)||(5240310-5240372)
chr7 (185-251)||(5347947-5348013)
chr7 (185-247)||(8380509-8380571)
chr7 (185-250)||(36279187-36279252)
chr7 (185-249)||(22707117-22707180)
chr7 (191-255)||(30538451-30538515)
chr7 (193-248)||(8258621-8258676)
chr7 (61-120)||(8292689-8292748)
chr7 (188-251)||(27053468-27053531)
chr7 (65-120)||(29687424-29687479)
chr7 (63-120)||(1910190-1910247)
chr7 (192-249)||(7322930-7322987)
chr7 (65-103)||(16492144-16492182)
chr7 (191-245)||(43958064-43958118)
chr7 (186-250)||(46478535-46478596)
chr7 (187-248)||(1910314-1910374)
chr7 (65-120)||(7323059-7323114)
chr7 (65-116)||(8258748-8258799)
chr7 (195-245)||(44207714-44207764)
chr7 (74-115)||(29959024-29959065)
chr7 (213-245)||(675090-675122)
chr7 (185-225)||(22521654-22521694)
chr7 (65-105)||(24937936-24937976)
chr7 (192-228)||(40066915-40066951)
[»] scaffold0062 (3 HSPs)
scaffold0062 (186-250)||(16748-16812)
scaffold0062 (186-250)||(26916-26980)
scaffold0062 (186-250)||(37082-37146)
[»] chr5 (32 HSPs)
chr5 (185-245)||(35653236-35653296)
chr5 (185-250)||(16315510-16315575)
chr5 (185-245)||(15915900-15915960)
chr5 (185-248)||(4421942-4422005)
chr5 (185-248)||(39567971-39568034)
chr5 (63-117)||(16315641-16315695)
chr5 (66-120)||(39567852-39567906)
chr5 (185-254)||(28143095-28143164)
chr5 (65-120)||(35653361-35653416)
chr5 (193-251)||(338739-338797)
chr5 (185-250)||(43414040-43414105)
chr5 (186-250)||(1479112-1479176)
chr5 (63-115)||(34546724-34546776)
chr5 (185-249)||(35945314-35945378)
chr5 (192-251)||(104904-104963)
chr5 (59-120)||(27823203-27823265)
chr5 (185-250)||(5151557-5151622)
chr5 (191-248)||(8410216-8410273)
chr5 (185-234)||(25017283-25017332)
chr5 (185-249)||(4962494-4962557)
chr5 (64-120)||(8410089-8410145)
chr5 (186-250)||(34546847-34546911)
chr5 (65-116)||(12914123-12914174)
chr5 (61-120)||(25017397-25017456)
chr5 (185-250)||(3639051-3639116)
chr5 (186-253)||(40099402-40099467)
chr5 (64-99)||(104984-105019)
chr5 (186-229)||(1759886-1759929)
chr5 (192-251)||(37243922-37243980)
chr5 (185-223)||(27823327-27823365)
chr5 (71-120)||(4422070-4422119)
chr5 (217-249)||(7736271-7736303)
[»] chr6 (16 HSPs)
chr6 (191-249)||(26572059-26572117)
chr6 (66-120)||(7875287-7875341)
chr6 (186-250)||(5578343-5578407)
chr6 (64-120)||(7880533-7880589)
chr6 (185-249)||(32786284-32786347)
chr6 (192-247)||(10855507-10855562)
chr6 (186-249)||(29692318-29692381)
chr6 (67-120)||(26572183-26572236)
chr6 (185-248)||(16437568-16437631)
chr6 (68-120)||(16437688-16437740)
chr6 (185-248)||(12191561-12191624)
chr6 (65-119)||(10855381-10855435)
chr6 (187-228)||(6866985-6867026)
chr6 (65-116)||(19645945-19645996)
chr6 (65-103)||(8825035-8825073)
chr6 (61-105)||(6770939-6770983)
[»] chr3 (34 HSPs)
chr3 (185-250)||(25102298-25102363)
chr3 (185-250)||(29915551-29915616)
chr3 (185-250)||(29964704-29964769)
chr3 (185-250)||(48136699-48136764)
chr3 (186-253)||(36730126-36730193)
chr3 (191-250)||(41346348-41346407)
chr3 (192-249)||(1803963-1804020)
chr3 (63-120)||(44570492-44570549)
chr3 (185-249)||(8715479-8715542)
chr3 (185-249)||(9067366-9067429)
chr3 (186-250)||(32415638-32415702)
chr3 (185-249)||(44570363-44570427)
chr3 (186-249)||(4759827-4759890)
chr3 (61-120)||(10854803-10854862)
chr3 (185-248)||(37509179-37509242)
chr3 (185-247)||(35306400-35306462)
chr3 (62-120)||(51817418-51817476)
chr3 (65-120)||(12050986-12051041)
chr3 (186-247)||(31647363-31647424)
chr3 (185-246)||(46317554-46317615)
chr3 (185-249)||(8847429-8847493)
chr3 (63-116)||(29915685-29915738)
chr3 (63-116)||(29964838-29964891)
chr3 (192-249)||(44695648-44695705)
chr3 (185-246)||(10854927-10854992)
chr3 (65-120)||(31647253-31647307)
chr3 (62-116)||(20406661-20406715)
chr3 (86-120)||(36730259-36730293)
chr3 (195-245)||(46055754-46055804)
chr3 (62-120)||(8715607-8715667)
chr3 (62-120)||(9067494-9067554)
chr3 (63-120)||(46317433-46317489)
chr3 (185-233)||(18780-18828)
chr3 (217-249)||(4195441-4195473)
[»] scaffold0809 (1 HSPs)
scaffold0809 (185-247)||(4249-4311)
[»] scaffold0144 (1 HSPs)
scaffold0144 (62-116)||(39534-39588)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 185 - 434
Target Start/End: Original strand, 55669807 - 55670057
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaacttaatcatccaaaa-atgagtaataaacca 283  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55669807 ccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcctaaacttaatcatccaaaaaatgagtaataaacca 55669906  T
Q  284 atttacttacccttgatgccagttttccagacagtgttggtgtacttaagacccgaaacaatattatggtttacttggaaagtaaacaccagcctataac 383  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669907 atgtacttacccttgatgccagttttccagacagtgttggtgtacttaagacccgaaacaatattatggtttacttggaaagtaaacaccagcctataac 55670006  T
Q  384 gagaaccttctttcaaagtaaaccataaaccctcgggatttcctgtctctg 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55670007 gagaaccttctttcaaagtaaaccataaaccctcgggatttcctgtctctg 55670057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 55669609 - 55669701
Alignment:
Q  1 ccaatcatctctttagtgctgtcaactgcaacaaacctcagcaataagatcactataaacttaagggtcttgctaaccattgccctgagggca 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669609 ccaatcatctctttagtgctgtcaactgcaacaaacctcagcaataagatcactataaacttaagggtcttgctaaccattgccctgagggca 55669701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 35808437 - 35808372
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35808437 ccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcct 35808372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 27839346 - 27839283
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  27839346 caatgctatatttctatttttattcccttatccaatgccccaagggcaatggttagcattctcc 27839283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 26040401 - 26040336
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26040401 ccaatactatatttctatttttatccccttatccaatgccccaaggacaatggttagcattctcct 26040336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 51290498 - 51290566
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 253  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  51290498 ccaatgctatatttctaattttatccccttatccaatgtcccaaggacaatggttagcattctcctaaa 51290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 41956254 - 41956188
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    |||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  41956254 ccaatgttatatttctatttttatcctcttatccgatgccccaagggcaatggttagcattctccta 41956188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 2362699 - 2362763
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  2362699 ccaatactatatttttatttttatccccttatccgatgccccaagggcaatggttagcattctcc 2362763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 34016693 - 34016757
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||    
T  34016693 ccaatgctatatttctatttttatccccttatccaatgtctcaaggacaatggttagcattctcc 34016757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 34316762 - 34316697
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||| ||||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||||    
T  34316762 caatgttatatttatatttttatctccttatccaatgccccaagggcaatggtgagcattctccta 34316697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 23765646 - 23765710
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||||| |||| |||||||||||| ||||| |||| ||||||||||||||||||||    
T  23765646 ccaatgctatatttcaatttttatccccttatctaatgcaccaaaggcaatggttagcattctcc 23765710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 31755007 - 31755071
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||| |||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  31755007 caattctatatttatatttttatccccttatccaataccccaatggcaatggttagcattctcct 31755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 47188827 - 47188771
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  47188827 agggtcttgctaaccattgccatcagggcaatggttaaggaagccaaaagtagcatg 47188771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 31487790 - 31487851
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattct 247  Q
    ||||||||||||| ||||| ||||||||||| |||||| |||||||||||||||| ||||||    
T  31487790 caatgctatatttttatttttatccccttattcaatgctccaagggcaatggttaacattct 31487851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 19876224 - 19876160
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||| |||||||||||||| ||||||||||||||||||  |||||| ||| |||||||||||||    
T  19876224 ccaatactatatttctatttttatccccttatccaatgcttcaagggtaattgttagcattctcc 19876160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 34316888 - 34316829
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||| ||||||||||  || ||||| |||||||||||||||||||||||    
T  34316888 ttaagggtcttgctagccattgccctcgggacaatggttaaggaagccaaaagtagcatg 34316829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 45688687 - 45688746
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||||||  | ||||||||  |||||||||||||||||||||||    
T  45688687 ttaagggtcttgctaaccattgcattcagggcaatagttaaggaagccaaaagtagcatg 45688746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 45688812 - 45688871
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||  ||||||||||||||    
T  45688812 caatgctatgtttctatttttatccccttatccaataccccaagaacaatggttagcatt 45688871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 16560025 - 16559975
Alignment:
Q  195 atttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  16560025 atttctatttttattcctttatccaatgccccaagggcaatggttagcatt 16559975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 54339061 - 54339115
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcat 119  Q
    |||||||||||||||||||||| || |||||| ||||||||| ||||||||||||    
T  54339061 gggtcttgctaaccattgccctcagagcaatggttaaggaagtcaaaagtagcat 54339115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 54339181 - 54339243
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    ||||| ||||||| ||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  54339181 caatgttatatttatatttttatccctttatccaatgccccaacgacaatggttagcattctc 54339243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 55669700 - 55669742
Alignment:
Q  78 cattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  55669700 cattgccctgagggcaatggttaaggaagccaaaagtagcatg 55669742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 19328777 - 19328724
Alignment:
Q  196 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  19328777 tttctatttttatccccttatccaatgccctaagaacaatggttagcattctcc 19328724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 26831820 - 26831763
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||| ||||| ||||| ||||||||||||| |||| |||||||||||||    
T  26831820 tatatttctatttttatcctcttattcaatgccccaaggacaattgttagcattctcc 26831763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 20811331 - 20811395
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||| |||||||||||  ||| |||||| |||||| |||||||||||||    
T  20811331 ccaatgttatatttctatttttatccccttatttaataccccaaaggcaatagttagcattctcc 20811395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 26040523 - 26040467
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcat 119  Q
    |||||||||||||||||||| ||| || ||| || ||||||||||||||||||||||    
T  26040523 aagggtcttgctaaccattgtcctcagagcagtggttaaggaagccaaaagtagcat 26040467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 30475494 - 30475554
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattc 246  Q
    |||| |||||||| ||||| |||| ||||||||||| ||| ||||||||||||||||||||    
T  30475494 caatactatatttttatttttatctccttatccaataccctaagggcaatggttagcattc 30475554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 31168202 - 31168266
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||| | |||||||| ||||||||| || ||||| ||||||||||| |||||||||||||    
T  31168202 ccaatgctaaaattctatttttatccccttgtctaatgctccaagggcaatagttagcattctcc 31168266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 32131210 - 32131274
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||| |||||||||||||| |||| | ||||||||||  |||||||||||||||| ||||||||    
T  32131210 ccaatactatatttctatttttatctctttatccaatgttccaagggcaatggttaacattctcc 32131274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 2362573 - 2362628
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    |||||||||| ||||||||||||| | ||||||||| ||||||||| |||||||||    
T  2362573 ttaagggtctcgctaaccattgccttcagggcaatggttaaggaagtcaaaagtag 2362628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 50514774 - 50514719
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||| || | ||||| |||||||| ||||||||||||||    
T  50514774 gggtcttgctaaccattgccccgatgtcaatggttaaggaaaccaaaagtagcatg 50514719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 51266993 - 51267056
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||| |||||||||||||| |||| ||||||||||||  ||||| |||||||||||| ||||||    
T  51266993 caatactatatttctatttttatctccttatccaatgttccaagagcaatggttagccttctcc 51267056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 23765527 - 23765581
Alignment:
Q  66 ggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||| ||| ||||  |||||||||| ||||||||||||    
T  23765527 ggtcttgctaaccattgccctcaggacaattgttaaggaagctaaaagtagcatg 23765581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 50514653 - 50514592
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    ||||| ||||||||||||| ||||| ||||||||||| | |||| ||||||||||||||||||    
T  50514653 caatgttatatttctattt-tatcctcttatccaatgtcacaagagcaatggttagcattctc 50514592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 30475374 - 30475423
Alignment:
Q  66 ggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagta 115  Q
    ||||||||||||||||||||| || |||||  ||||||||||||||||||    
T  30475374 ggtcttgctaaccattgccctcagagcaatagttaaggaagccaaaagta 30475423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 53566990 - 53566935
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttag 241  Q
    ||||||||||||||||||| |||| | ||| |||||||||||| | ||||||||||    
T  53566990 caatgctatatttctatttttatctctttaaccaatgccccaaagacaatggttag 53566935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 20456522 - 20456572
Alignment:
Q  70 ttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||| ||| || ||||||||||||||||||  |||||||||||||    
T  20456522 ttgctaaccagtgctcttagggcaatgattaaggaaatcaaaagtagcatg 20456572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 54400286 - 54400336
Alignment:
Q  195 atttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||| ||||| ||| || |||||||||||||| ||||||||||||||||||    
T  54400286 atttttatttttattcctttatccaatgccccgagggcaatggttagcatt 54400336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 50620756 - 50620715
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaa 105  Q
    |||||||||||||||| |||||| ||||||||| ||||||||    
T  50620756 agggtcttgctaaccaatgcccttagggcaatggttaaggaa 50620715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 11086419 - 11086379
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaagga 104  Q
    |||||||||||||||| |||||| ||||||||| |||||||    
T  11086419 agggtcttgctaaccagtgccctaagggcaatggttaagga 11086379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 27976844 - 27976896
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    ||||| |||||||| | |||||| |||||||||||||| ||| ||||||||||    
T  27976844 agggtgttgctaactagtgccctaagggcaatgattaaagaatccaaaagtag 27976896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 41956375 - 41956319
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||| |||| ||| ||||||||| || |||||| ||||||||| |||||||||||||    
T  41956375 agggccttgttaatcattgccctcagagcaatggttaaggaaggcaaaagtagcatg 41956319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 45088020 - 45088069
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    ||||||||||||||||||||||    |||||||| |||||||| ||||||||||    
T  45088020 aagggtcttgctaaccattgcc----gggcaatggttaaggaaaccaaaagtag 45088069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 51266895 - 51266927
Alignment:
Q  88 agggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||| |||||||||||||    
T  51266895 agggcaatgattaaggaagtcaaaagtagcatg 51266927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 34874635 - 34874700
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34874635 ccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcct 34874700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 41147515 - 41147450
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  41147515 caatgctatatttctatttttatccccttatccaatgccccaaggacaatggttagcattctccta 41147450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 49508772 - 49508707
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  49508772 ccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggttaacattttcct 49508707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 2125744 - 2125681
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  2125744 caatgctatatttctatttttatccccttatccaatgccccaagaacaatggttagcattctcc 2125681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 11385848 - 11385780
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 253  Q
    ||||| |||||||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  11385848 ccaatactatatttctatttttatccccttatccaatgctgcaagggcaatggtcagcattctcctaaa 11385780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 22346274 - 22346210
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  22346274 caatactatatttctatttttattcccttatccaaagccccaagggcaatggttagcattctcct 22346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 27209759 - 27209695
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  27209759 ccaatgttatatttctatttttatccctttatccaatgccccaaggacaatggttagcattctcc 27209695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 27209880 - 27209828
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27209880 agggtcttgctaaccattgccctgagggcaatggttaaggaagccaaaagtag 27209828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 7190511 - 7190448
Alignment:
Q  187 aatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||    
T  7190511 aatgctatatttctatttttatcctcttaaccaatgccccaagggcaaaggttagcattctcct 7190448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 43433849 - 43433907
Alignment:
Q  191 ctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  43433849 ctatatttctatttttatccccttatccaatgccccaagagcaatagttagcattctcc 43433907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 4940778 - 4940713
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| |||||||||||||||||| || |  ||||||||||||||||||||    
T  4940778 ccaatgctatatttctatttttatccccttatccaatgcgcctaaagcaatggttagcattctcct 4940713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 22346396 - 22346340
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  22346396 agggtcttgctaaccattgccttgaggacaatggttaaggaagccaaaagtagcatg 22346340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 28850948 - 28850884
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||| ||| | |||||| |||||||||||||||||||||||||||||||    
T  28850948 ccaatgttatatttctatttttattctcttatctaatgccccaagggcaatggttagcattctcc 28850884  T

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Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 29966892 - 29966956
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||| |||||||||    
T  29966892 caatgctatatttatatttttatccccttatccaatgctccaaggacaatggttaacattctcct 29966956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 42607361 - 42607298
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  42607361 caatgctatatttttatttttatccccttatccaataccctaagggcaatggttaacattctcc 42607298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 24140848 - 24140904
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  24140848 tatatttctatttttatccccttatc-aatgccccaaaggcaatggttagcattctcc 24140904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 932195 - 932151
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaag 229  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  932195 ccaatgctatatttctatttttatccccttatccaatgccccaag 932151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 7190634 - 7190578
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||    
T  7190634 agggtcttgctaaccattgcccttaggacaatggttaaggaagctaaaagtagcatg 7190578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 47655408 - 47655344
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||| |||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||    
T  47655408 caatgctatacttctatttttatccccttattcaatgtcttaagggcaatggttagcattctcct 47655344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 8244156 - 8244219
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatgg-ttagcattct 247  Q
    |||||| ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||    
T  8244156 ccaatgttatatttctatatttatccccttatccaatgccccaagagcaatggattagcattct 8244219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 31975556 - 31975619
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||| ||||||||||||| |||| | ||||||||| || ||||||||||||||||||||||||    
T  31975556 caatgttatatttctatttatatctctttatccaatacctcaagggcaatggttagcattctcc 31975619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 40845320 - 40845379
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||| |||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||    
T  40845320 caatactatatttctatttttatccccttattcaatgtctcaagggcaatggttagcatt 40845379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 11386049 - 11386114
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| |||||  ||||| |||| ||||||| ||||||| |||||||||||    
T  11386049 ccaatgctatatttctatttttatccaattatctaatgtcccaaggacaatggtgagcattctcct 11386114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 32213927 - 32213862
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||| | ||||||||||| |||||||||||| |||| |||||| ||||||||||| ||||||||    
T  32213927 ccaatgttctatttctatttttatccccttatctaatgtcccaagagcaatggttagtattctcct 32213862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 50295471 - 50295404
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaa 252  Q
    ||||| |||||||||||||| || |||||||||||||||||||| | | ||| ||| |||||||||||    
T  50295471 ccaatactatatttctatttttacccccttatccaatgccccaaagacgatgattaacattctcctaa 50295404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 43433724 - 43433774
Alignment:
Q  66 ggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    |||||||||||| |||||| |||||| |||| |||||||||||||||||||    
T  43433724 ggtcttgctaactattgccttgagggtaatggttaaggaagccaaaagtag 43433774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 5945496 - 5945553
Alignment:
Q  193 atatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||| |||  | ||||||||||| |||||| |||||||||||||||||||    
T  5945496 atatttctatttttatttcgttatccaatgctccaaggacaatggttagcattctcct 5945553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 45721820 - 45721884
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||| ||||||| ||||| |||| ||||||||||||| |||| ||||||||||||| |||||||    
T  45721820 ccaatgttatatttttatttttatcaccttatccaatgctccaa-ggcaatggttagccttctcct 45721884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 49508893 - 49508836
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||| |||||||| | | ||||| |||| ||||||||||||||||||    
T  49508893 aagggtcttgctaactattgccctcaagacaatggttaaagaagccaaaagtagcatg 49508836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 26469619 - 26469555
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||| ||||| |||||| |||||||||   ||||||||| || |||||||||||||    
T  26469619 caatgctatatttttatttttatccctttatccaatattccaagggcagtgattagcattctcct 26469555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 33930035 - 33930099
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||| ||||| ||||||||||||||||  | ||| | ||||||||| |||||||||    
T  33930035 caatgctatatttatatttttatccccttatccaatatctcaaagacaatggttaacattctcct 33930099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 52396511 - 52396571
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgcc-ccaagggcaatggttagcatt 245  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||  | |||||||||||||    
T  52396511 caatactatatttctatttttatccccttatccaatgcctccaatagtaatggttagcatt 52396571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 8772511 - 8772541
Alignment:
Q  217 ccaatgccccaagggcaatggttagcattct 247  Q
    |||||||||||||||||||||||||||||||    
T  8772511 ccaatgccccaagggcaatggttagcattct 8772541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 47895283 - 47895337
Alignment:
Q  66 ggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||| ||||||||| ||| || |||||| |||||||||||||||||| ||||    
T  47895283 ggtcttgttaaccattgtcctcagagcaatggttaaggaagccaaaagtaacatg 47895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 4940900 - 4940843
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||| || ||| ||||||||  |||||||| |||||| |||||||    
T  4940900 aagggtcttgctaaccactgtcctcagggcaatagttaaggaaaccaaaaatagcatg 4940843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 26060288 - 26060321
Alignment:
Q  212 cttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||||||||| |||||||||||||||||||||    
T  26060288 cttatccaatgctccaagggcaatggttagcatt 26060321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 30222993 - 30223050
Alignment:
Q  191 ctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||||||| ||||| ||||||||||||||||||   |||||||| ||| |||||||||    
T  30222993 ctatatttatatttttatccccttatccaatgctttaagggcaacggtaagcattctc 30223050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 6170589 - 6170525
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||||||||| |||| | ||||||||| || ||| ||||| | ||| ||||||||    
T  6170589 ccaatgctatatttctatttttatctctttatccaatacctcaatggcaaagattaacattctcc 6170525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 8244044 - 8244092
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaa 112  Q
    |||||||||| ||||||||| |  ||||||||| |||||||||||||||    
T  8244044 agggtcttgcaaaccattgcacccagggcaatggttaaggaagccaaaa 8244092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 26701492 - 26701532
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaa 101  Q
    |||||||||||||||||||||| ||| ||||||||| ||||    
T  26701492 ttaagggtcttgctaaccattgtcctaagggcaatggttaa 26701532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 38680917 - 38680885
Alignment:
Q  213 ttatccaatgccccaagggcaatggttagcatt 245  Q
    ||||||||||||||||| |||||||||||||||    
T  38680917 ttatccaatgccccaagagcaatggttagcatt 38680885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 44603775 - 44603735
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaagga 104  Q
    |||||||||||||||| |||||| ||||||||| |||||||    
T  44603775 agggtcttgctaaccagtgccctaagggcaatggttaagga 44603735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 19389351 - 19389283
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 253  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19389351 ccaatactatatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcctaaa 19389283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 45338073 - 45338135
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  45338073 caatgttatatttctatttttatccccttatccaatgcccaaaggacaatggttagcattctc 45338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 4990001 - 4990066
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||||||||||||    
T  4990001 ccaatgctatatttctatttttatccccttatccaatgctacaaggacaatgattagcattctcct 4990066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 21016097 - 21016033
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| ||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||    
T  21016097 caatgttatatttctatttttatccccttatccaaagcctcaaaggcaatggttagcattctcct 21016033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 5129496 - 5129433
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||| |||| |||||||||||| ||||| | |||||||||||||||||||||||    
T  5129496 caatgctatatttcaatttttatccccttatcaaatgctctaagggcaatggttagcattctcc 5129433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 21016309 - 21016368
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||    
T  21016309 tatatttctatttttatccccttatccaaagccccaaaggcaatggttagcattatccta 21016368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 26672858 - 26672922
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| |||||| |||||||||  ||||||| |||||||||||||||||||    
T  26672858 ccaatgctatatttctatttttatccctttatccaat-acccaaggacaatggttagcattctcct 26672922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 4989884 - 4989939
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||    
T  4989884 gggtcttgctaaccattgccctcatggcaatggttaaggaagtcaaaagtagcatg 4989939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 3174402 - 3174459
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||||||| | |||||   |||||||||||||||||||||||    
T  3174402 aagggtcttgctaaccattgccctcatggcaacagttaaggaagccaaaagtagcatg 3174459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 35930205 - 35930270
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    |||| |||||||| ||||| ||||  |||||||||||| |||||||||||||||| ||||||||||    
T  35930205 caatactatatttttatttttatcttcttatccaatgctccaagggcaatggttatcattctccta 35930270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 6939227 - 6939291
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| ||||||||||||| |||| | |||| |||||||||| || |||||||||||||||||||    
T  6939227 caatgttatatttctatttttatctcattattcaatgccccatggacaatggttagcattctcct 6939291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 18808956 - 18809000
Alignment:
Q  206 tatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  18808956 tatccccttatccaatgccccaagggcaatggttaacattatcct 18809000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 26672735 - 26672778
Alignment:
Q  62 taagggtcttgctaaccattgccctgagggcaatgattaaggaa 105  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  26672735 taagggtcttgctaatcattgccctgagggcaatggttaaggaa 26672778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 22488798 - 22488765
Alignment:
Q  217 ccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||||||||||||||||||    
T  22488798 ccaatgccccaagggcaatggttagcattctcct 22488765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 19976525 - 19976465
Alignment:
Q  192 tatatttctatttctatccc-cttatccaatgccccaagggcaatggttagcattctccta 251  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||||||||| |||||    
T  19976525 tatatttctacttttatcccacttatccaaagccccaaaggcaatggttagcattatccta 19976465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 27982456 - 27982417
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaagga 104  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  27982456 gggtcttgctaaccagtgccctaagggcaatgattaagga 27982417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 28039758 - 28039719
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaagga 104  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  28039758 gggtcttgctaaccagtgccctaagggcaatgattaagga 28039719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 18068241 - 18068285
Alignment:
Q  68 tcttgctaaccattgccctgagggcaatgattaaggaagccaaaa 112  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  18068241 tcttgctaaccattgccctcaggacaatggttaaggaaaccaaaa 18068285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 18069030 - 18069062
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatc 217  Q
    |||||||||||||||||||| ||||||||||||    
T  18069030 ccaatgctatatttctatttttatccccttatc 18069062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 18131339 - 18131299
Alignment:
Q  62 taagggtcttgctaaccattgccctgagggcaatgattaag 102  Q
    |||||||||||||||| | |||||| |||||||||||||||    
T  18131339 taagggtcttgctaactaatgccctcagggcaatgattaag 18131299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 26195414 - 26195354
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||| ||||||||||||| |||||||||||  |||| |||||  ||||| |||||||||    
T  26195414 ccaatgttatatttctatttttatccccttatttaatgtcccaaaagcaatagttagcatt 26195354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 765191 - 765126
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  765191 ccaatgttatatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcct 765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 39401575 - 39401511
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39401575 caatgttatatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcct 39401511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 1321236 - 1321303
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaa 252  Q
    |||||| ||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||    
T  1321236 ccaatgttatatttctatttttatcctcttatccaatgctccaaggacaatggttagcattctcctaa 1321303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 27495193 - 27495259
Alignment:
Q  187 aatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 253  Q
    |||| ||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  27495193 aatgttatatttttatttttatccccttattcaatgccccaagtgcaatggttagcattctcctaaa 27495259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 9215041 - 9215122
Alignment:
Q  290 ttacccttgatgccagttttccagacagtgttggtgtacttaagacccgaaacaatattatggtttacttggaaagtaaaca 371  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| || |||||||| ||||    
T  9215041 ttacctttgataccagttttccacacagtgttggtgtacttgagacctgaaacaatgttatggttgacctggaaagtgaaca 9215122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 17056092 - 17056033
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||    
T  17056092 tatatttctttttttatccctttatccaatgccctaagggcaatggttagcattctccta 17056033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 17068539 - 17068480
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||    
T  17068539 tatatttctttttttatccctttatccaatgccctaagggcaatggttagcattctccta 17068480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 17074522 - 17074463
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||    
T  17074522 tatatttctatttttatccctttatctaatgccctaagggcaatggttagcattctccta 17074463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 6999148 - 6999205
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  6999148 aagggttttgctaaccattgtcctcagggcaatggttaaggaagccaaaagtagcatg 6999205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 16361634 - 16361694
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||| ||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||    
T  16361634 ccaatgttatatttctatttttattcccttatccaatgctccaagggcaattgttagcatt 16361694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 39085833 - 39085773
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||| ||||||||||||| |||||| |||||||||| |||||| |||||||||||||||    
T  39085833 ccaatgttatatttctatttttatccctttatccaatgtcccaagagcaatggttagcatt 39085773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 2966608 - 2966675
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaa 252  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| ||   ||||||||||||||||||||    
T  2966608 ccaatgttatatttctatttttatccccttatccaatgtccccagataaatggttagcattctcctaa 2966675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 17095101 - 17095042
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||||||||| |||||| ||||||||||||| |||  ||||||||||||||||||||    
T  17095101 tatatttctatttttatccctttatccaatgccctaagaacaatggttagcattctccta 17095042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 17603880 - 17603935
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttag 241  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||| ||||    
T  17603880 caatgctatatttctatttttatcgcgttatccaatgccccaagggcaatgattag 17603935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 23685689 - 23685638
Alignment:
Q  200 tatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||||||    
T  23685689 tatttttatccctttatccaatgccccaagggcaatggttaacattctccta 23685638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 862657 - 862719
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattct 247  Q
    ||||| |||||||||||||| |||||| |||| |||||||| ||||||||| |||||||||||    
T  862657 ccaatactatatttctatttttatcccattattcaatgccctaagggcaattgttagcattct 862719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 33726449 - 33726498
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaat 235  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  33726449 caatactatatttttatttttatccccttatccaatgccccaagggcaat 33726498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 2966486 - 2966542
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcat 119  Q
    |||||||||||||| ||||| ||| ||||||||| |||||||||| |||||||||||    
T  2966486 aagggtcttgctaatcattgtcctcagggcaatggttaaggaagctaaaagtagcat 2966542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 44299717 - 44299658
Alignment:
Q  190 gctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||||| ||||| |||| ||||||||||||  |||||| ||||||||||||    
T  44299717 gctatatttctatttttatcctcttacccaatgccccaaaagcaatgattagcattctcc 44299658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 13997944 - 13997882
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    ||||||||||||||||||| ||| |||||||| ||| || |||  ||||||||||||||||||    
T  13997944 caatgctatatttctatttttattcccttatctaattcctcaaaagcaatggttagcattctc 13997882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 862559 - 862592
Alignment:
Q  87 gagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||||||||||||||||    
T  862559 gagggcaatgattaaggaagccaaaagtagcatg 862592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 33864423 - 33864488
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||| |||||| ||||| ||||| ||||| ||||| | ||||||||||||||| |||||||||    
T  33864423 ccaatgcgatatttttatttttatcctcttattcaatgtctcaagggcaatggttaacattctcct 33864488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 6999270 - 6999334
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||| |||||||||||||| |||| ||||||||| |||||||   |||||| ||||||||||||    
T  6999270 ccaatactatatttctatttttatctccttatccattgccccagaagcaatgattagcattctcc 6999334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 9991453 - 9991421
Alignment:
Q  213 ttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||||||||||||||||||||||||||||||    
T  9991453 ttatccaatgccccaagggcaatggttagcatt 9991421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 4023355 - 4023398
Alignment:
Q  206 tatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  4023355 tatccccttattcaatgccccaaggacaatggttaacattctcc 4023398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 35445330 - 35445275
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttag 241  Q
    ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||||||    
T  35445330 caatgttatatttatatttttatccccttattcaatgccctaagggtaatggttag 35445275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 1321117 - 1321171
Alignment:
Q  67 gtcttgctaaccattgccctgagggcaat-gattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||| |||||||| | ||||||||||||||  |||||||    
T  1321117 gtcttgctaaccattgccctcagggcaatgggttaaggaagccaaagttagcatg 1321171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 6084650 - 6084692
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaagg 103  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||    
T  6084650 ttaagggtctcgctaaccattgccctcaggacaatgattaagg 6084692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 39085952 - 39085898
Alignment:
Q  66 ggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||| ||| || |||||| ||||||||| |||||| ||||||    
T  39085952 ggtcttgctaaccattgtcctcagagcaatggttaaggaagtcaaaagcagcatg 39085898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 246
Target Start/End: Original strand, 8033381 - 8033410
Alignment:
Q  217 ccaatgccccaagggcaatggttagcattc 246  Q
    ||||||||||||||||||||||||||||||    
T  8033381 ccaatgccccaagggcaatggttagcattc 8033410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 1870462 - 1870502
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaa 105  Q
    ||||||||||||||| |||||| ||||||||| ||||||||    
T  1870462 gggtcttgctaaccagtgccctcagggcaatggttaaggaa 1870502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 16361537 - 16361569
Alignment:
Q  88 agggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||||||||||| ||||    
T  16361537 agggcaatgattaaggaagccaaaagtaacatg 16361569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 41436547 - 41436611
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||| |||||||| ||||| ||||||||||| ||||  ||||||  ||||||||| |||||||||    
T  41436547 caatactatatttttatttttatccccttattcaatatcccaagaacaatggttaccattctcct 41436611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 44173188 - 44173252
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||| ||||   ||||| |||| |||||   |||||||||||||||||||    
T  44173188 caatgctatatttctatttttatcatattatcaaatgtcccaaaaacaatggttagcattctcct 44173252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 40763318 - 40763380
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40763318 caatgttatatttctatttttatccccttatccaatgccccaagggcaatggttagcattctc 40763380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 48454863 - 48454799
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  48454863 ccaatgttatatttctatttttatccccttatccaatgccccaagggtaatggttaacattctcc 48454799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 24359745 - 24359683
Alignment:
Q  189 tgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    |||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||    
T  24359745 tgctatatttctatttttatccccttatccaatacccgaagggcaatggttaacattctccta 24359683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 29034755 - 29034821
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||| |||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  29034755 ccaatactatatttatatttttatccccttatccaatgcctcaaggacaatggttagcattctccta 29034821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 43567547 - 43567482
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  43567547 ccaatactataattctatttttatctccttatccaatgccccaagggcaatggttagcaatctcct 43567482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 8292813 - 8292877
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||||||||| |||||||||||||||||| |||| | ||||| ||||||||||||    
T  8292813 ccaatgctatatttctatttttatccccttatccaatgctccaaagacaatgattagcattctcc 8292877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 5240372 - 5240310
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||| |||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||    
T  5240372 caatactatatttctatttttatccctttatccaatgcctcaaggacaatggttagcattctc 5240310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 5348013 - 5347947
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    |||||| ||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  5348013 ccaatgttatatttctatttatattcccttattcaatgccctaagggtaatggttagcattctccta 5347947  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 8380509 - 8380571
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattct 247  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||| ||||||    
T  8380509 ccaatgctatatttttatttttatccccttatccaataccccaagggccatggttaacattct 8380571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 36279187 - 36279252
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||| ||||| |||||  ||||||||||||||||| | ||||||||||||||||||    
T  36279187 ccaatgctatatttatatttttatcctattatccaatgccccaagagtaatggttagcattctcct 36279252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 22707117 - 22707180
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||||||||| |||||  |||| ||||||||||| ||||||||||||||||||||    
T  22707117 ccaatgctatatttctatttttatcct-ttattcaatgccccaaaggcaatggttagcattctcc 22707180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 30538515 - 30538451
Alignment:
Q  191 ctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaact 255  Q
    |||||||||||||| |||||||||||| |||| ||||||| ||||| |||||||||||| |||||    
T  30538515 ctatatttctatttttatccccttatctaatgtcccaaggacaatgattagcattctccaaaact 30538451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 8258676 - 8258621
Alignment:
Q  193 atatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||    
T  8258676 atatttctatttttatccccttatccgatgccccaagggcaatagttaacattctc 8258621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 8292689 - 8292748
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||| ||||||||||||| | ||||||||||| ||||||||| |||||||||||||    
T  8292689 ttaagggttttgctaaccattgtcgtgagggcaatggttaaggaagtcaaaagtagcatg 8292748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 27053531 - 27053468
Alignment:
Q  188 atgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||||||||||||| |||||| ||||||||||||| |||| ||||| |||| |||||||||    
T  27053531 atgctatatttctatttttatccctttatccaatgccctaaggacaatgattagtattctccta 27053468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 29687424 - 29687479
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||||| | ||||||  |||||||||||||||||||||||    
T  29687424 gggtcttgctaaccattgccctcaaggcaatacttaaggaagccaaaagtagcatg 29687479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 1910190 - 1910247
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||||| | ||||||||| |||| |||| |||||||||||||    
T  1910190 aagggtcttgctaaccattgccatcagggcaatggttaaagaagtcaaaagtagcatg 1910247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 7322987 - 7322930
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||| ||||| ||||||||||  | ||||||||||||||||||||||||    
T  7322987 tatatttctatttttatcctcttatccaatatctcaagggcaatggttagcattctcc 7322930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 16492182 - 16492144
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaagg 103  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16492182 gggtcttgctaaccattgcccttagggcaatgattaagg 16492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 43958118 - 43958064
Alignment:
Q  191 ctatatttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||||||||||| |||| ||||||||||||  | |||||||||||||||||||    
T  43958118 ctatatttctatttttatcgccttatccaatggtctaagggcaatggttagcatt 43958064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 46478596 - 46478535
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| ||||||||||||| |||||||||||||||||    |||||||||| |||||||||||||    
T  46478596 caatgatatatttctatttttatccccttatccaatg---taagggcaatgattagcattctcct 46478535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 1910314 - 1910374
Alignment:
Q  187 aatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||| ||||||||||||| |||||| ||||| ||||||| |||||||||| |||||||||||    
T  1910314 aatgttatatttctatttttatccc-ttatcaaatgccctaagggcaatgattagcattctc 1910374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 7323114 - 7323059
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||| ||||| |||||| |||||| |||| |||| |||||||||||||    
T  7323114 gggtcttgctaatcattgtcctgagagcaatggttaaagaagtcaaaagtagcatg 7323059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 8258799 - 8258748
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    |||||||||||||||||||||| || ||||||||||  |||| |||||||||    
T  8258799 gggtcttgctaaccattgcccttagtgcaatgattattgaaggcaaaagtag 8258748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 44207714 - 44207764
Alignment:
Q  195 atttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||||||| | | || |||||||||||| ||||||||||||||||||||    
T  44207714 atttctatttttgttcctttatccaatgccacaagggcaatggttagcatt 44207764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 29959024 - 29959065
Alignment:
Q  74 taaccattgccctgagggcaatgattaaggaagccaaaagta 115  Q
    |||||||||| |||||| |||||||||||||| |||||||||    
T  29959024 taaccattgctctgaggacaatgattaaggaaaccaaaagta 29959065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 675122 - 675090
Alignment:
Q  213 ttatccaatgccccaagggcaatggttagcatt 245  Q
    ||||||||||||| |||||||||||||||||||    
T  675122 ttatccaatgcccaaagggcaatggttagcatt 675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 22521654 - 22521694
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccc 225  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  22521654 ccaatgctatatttctagttttatcctcttatccaatgccc 22521694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 24937976 - 24937936
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaa 105  Q
    ||||||||||||||| |||||| ||||||||| ||||||||    
T  24937976 gggtcttgctaaccagtgccctcagggcaatggttaaggaa 24937936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 40066951 - 40066915
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaa 228  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  40066951 tatatttctatttttatccccttatccaatgcaccaa 40066915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 16812 - 16748
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  16812 caatgctatatttctatttttatccccttatccaatgccctatgggcaatggttagcattctcct 16748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 26980 - 26916
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  26980 caatgctatatttctatttttatccccttatccaatgccctatgggcaatggttagcattctcct 26916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 37146 - 37082
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  37146 caatgctatatttctatttttatccccttatccaatgccctatgggcaatggttagcattctcct 37082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 35653296 - 35653236
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  35653296 ccaatgctatatttctatttttatccccttatccaatgcaccaagggcaatggttagcatt 35653236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 16315575 - 16315510
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  16315575 ccaatgctatatttctatttttatccccttatccgatgcccaaagggcagtggttagcattctcct 16315510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 15915900 - 15915960
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||    
T  15915900 ccaatgctatatttctatttttattcccttatccaatgccccaagtgcaatggttagcatt 15915960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 4422005 - 4421942
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||    
T  4422005 ccaatgctatatttctatttttatcctcttatccaatgccctaagggcaatggttaacattctc 4421942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 39567971 - 39568034
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  39567971 ccaatgctatatttatatttttatcccattatccaatgccccaagggcaatggttatcattctc 39568034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 16315695 - 16315641
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagc 117  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  16315695 aagggtcttgctaaccattgccctcagggcaatggttaaggaagccaaaagtagc 16315641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 39567852 - 39567906
Alignment:
Q  66 ggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  39567852 ggtcttgctaaccattgccctcagggcaatgattaaggaagtcaaaagtagcatg 39567906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 28143164 - 28143095
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaac 254  Q
    |||||| ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||| |||||    
T  28143164 ccaatgttatatttctatttttatctccttattcaatgtcccaagggcaatggttagcattctcttaaac 28143095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 35653416 - 35653361
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  35653416 gggtcttgctaaccattgccctcagggcaatggttaaggaagccaaaagtaccatg 35653361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 338797 - 338739
Alignment:
Q  193 atatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||||||    
T  338797 atatttttatttttatccctttatccaatgccccaagggcaatggttaggattctccta 338739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 43414105 - 43414040
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| |||||||||||||  || ||||||||||||  |||||||||||||    
T  43414105 ccaatgctatatttctatttttatccccttatcccttgtcccaagggcaattcttagcattctcct 43414040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 1479176 - 1479112
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||   ||||||||||||||||||    
T  1479176 caatgctatatttctatttttatccccttattcaatgcctcaagaataatggttagcattctcct 1479112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 34546724 - 34546776
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagta 115  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||    
T  34546724 aagggtcttgctaactattgccctaagggcaatggttaaggaagccaaaagta 34546776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 35945314 - 35945378
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||| ||| |||||||||||| ||||||| |||||| ||||||||||||    
T  35945314 ccaatgttatatttctatttttattcccttatccaataccccaagagcaatgattagcattctcc 35945378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 104963 - 104904
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||||||||| ||  |||||||||||| ||||||| |||||||||||||||||||||    
T  104963 tatatttctatttttactcccttatccaataccccaagagcaatggttagcattctccta 104904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 27823203 - 27823265
Alignment:
Q  59 acttaagggtcttgctaaccattgccctg-agggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||| ||||| |||||||    
T  27823203 acttaagggtcttgctgaccattgccctccagggcaatgattaaggaagtcaaaattagcatg 27823265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 5151557 - 5151622
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||| ||||||||||||| |||||||||||| |||||| ||| | |||||||||||| ||||||    
T  5151557 ccaatgttatatttctatttttatccccttatcaaatgcctcaatgacaatggttagcactctcct 5151622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 8410216 - 8410273
Alignment:
Q  191 ctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||||||| ||||| |||||||||||| ||| |||||| |||||||||||||||||||    
T  8410216 ctatatttttatttttatccccttatctaataccccaaaggcaatggttagcattctc 8410273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 25017332 - 25017283
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaa 234  Q
    ||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  25017332 ccaatactatatttctatttttatccccttatccaatgcctcaagggcaa 25017283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 4962557 - 4962494
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||| ||| || |||||||||| |||||||||||||| |||||||||||    
T  4962557 ccaatgttatatttctatttttattcc-ttatccaatgtcccaagggcaatgggtagcattctcc 4962494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 8410089 - 8410145
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||| ||| ||||||||| | ||||||||||||||||||||||| |||||||    
T  8410089 agggtcttgttaatcattgccctcaaggcaatgattaaggaagccaaaactagcatg 8410145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 34546847 - 34546911
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| ||||||||||||| |||||||||||||||| | |||||| ||||| ||| |||||||||    
T  34546847 caatgttatatttctatttttatccccttatccaatactccaaggacaatgattatcattctcct 34546911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 12914123 - 12914174
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    |||||||| ||| |||||||||||||| |||| |||||||||||||||||||    
T  12914123 gggtcttgataatcattgccctgagggtaatggttaaggaagccaaaagtag 12914174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 25017456 - 25017397
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||||| || |  |||||| ||||||||| |||||||||||||    
T  25017456 ttaagggtcttgctaaccattgctctcaaagcaatggttaaggaagtcaaaagtagcatg 25017397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 3639116 - 3639051
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||| ||||||||||||| ||||||||||| ||||| | ||||  |||||||||||||| ||||    
T  3639116 ccaatgttatatttctatttttatccccttattcaatgtctcaagaacaatggttagcattgtcct 3639051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 40099402 - 40099467
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 253  Q
    ||||||||||||| ||||| |  |||||||||||||||| ||||| ||||||||| |||||| |||||    
T  40099402 caatgctatatttttattttt--ccccttatccaatgccacaaggacaatggttaacattcttctaaa 40099467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 105019 - 104984
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgatt 99  Q
    ||||||||||||||||||||||| ||||||||||||    
T  105019 agggtcttgctaaccattgccctaagggcaatgatt 104984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 1759886 - 1759929
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaag 229  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||    
T  1759886 caatactatatttctatttttatcctcttatccaatgccccaag 1759929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 37243922 - 37243980
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 251  Q
    ||||||| ||||| |||||  |||||||||||| ||||||||||| ||||||||||||||    
T  37243922 tatatttttatttttatcct-ttatccaatgcctcaagggcaatgattagcattctccta 37243980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 27823327 - 27823365
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgc 223  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  27823327 ccaatactatatttctatttttatccccttatccaatgc 27823365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 4422119 - 4422070
Alignment:
Q  71 tgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||| |||||||| |||||||||||| ||||||||| |||||||| ||||    
T  4422119 tgctgaccattgcactgagggcaatggttaaggaagtcaaaagtaacatg 4422070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 7736303 - 7736271
Alignment:
Q  217 ccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||||||||||||||||    
T  7736303 ccaatgtcccaagggcaatggttagcattctcc 7736271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 26572117 - 26572059
Alignment:
Q  191 ctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  26572117 ctatatttctatttttatccccttatccaatgccccaaggacaatggttagcattctcc 26572059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 7875341 - 7875287
Alignment:
Q  66 ggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  7875341 ggtcttgctaaccattgccctcggggcaatgattaaggaagccaaaagtagcatg 7875287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 5578343 - 5578407
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||| |||| |||||||||    
T  5578343 caatgctatatttctatttttatcccctcatccaatgcctcaagggcaatagttatcattctcct 5578407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 7880589 - 7880533
Alignment:
Q  64 agggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  7880589 agggtcttgctaaccattaccctcggggcaatgattaaggaagccaaaagtagcatg 7880533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 32786284 - 32786347
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  32786284 ccaatgttatatttctatttttatccc-ttatccaataccccaagggcaatggttagcattctcc 32786347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 10855507 - 10855562
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattct 247  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  10855507 tatatttctatttttatccccttatcaaatgccccaaggacaatggttagcattct 10855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 29692381 - 29692318
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||| |||||||||||||| |||||  |||||||||||||||||||||||| ||||||||||||    
T  29692381 caatactatatttctatttttatccatttatccaatgccccaagggcaatgattagcattctcc 29692318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 26572236 - 26572183
Alignment:
Q  67 gtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  26572236 gtcttgctaaccattgccctcagggcaatggttaaggaagtcaaaagtagcatg 26572183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 16437631 - 16437568
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||||| ||||||||||||| ||||| |||||||||||||  ||| ||||||||||||||||||    
T  16437631 ccaatgttatatttctatttttatccacttatccaatgccttaagagcaatggttagcattctc 16437568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 16437740 - 16437688
Alignment:
Q  68 tcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||| ||||||||||||||||||||||| |||||||| |||| |||||||||    
T  16437740 tcttgttaaccattgccctgagggcaatggttaaggaaaccaacagtagcatg 16437688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 12191561 - 12191624
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||  |||||| ||||| |||||    
T  12191561 ccaatgctatatttctatttttatccacttatccaatgcgccaaacgcaatgattagcgttctc 12191624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 10855381 - 10855435
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcat 119  Q
    |||||||||||||||||| ||||||||||||| |||| |||  ||||||||||||    
T  10855381 gggtcttgctaaccattgtcctgagggcaatggttaaagaaatcaaaagtagcat 10855435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 6866985 - 6867026
Alignment:
Q  187 aatgctatatttctatttctatccccttatccaatgccccaa 228  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  6866985 aatgctatatttttatttttatccccttatccaatgccccaa 6867026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 19645945 - 19645996
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    |||||||||||||||||| ||| ||||||||| |||||||| | ||||||||    
T  19645945 gggtcttgctaaccattgtcctcagggcaatggttaaggaaactaaaagtag 19645996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 8825035 - 8825073
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaagg 103  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  8825035 gggtcttgctaaccattgccttgagggcaatggttaagg 8825073  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 6770983 - 6770939
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaaggaa 105  Q
    ||||||||||||||||||| |||||| |||||| || ||||||||    
T  6770983 ttaagggtcttgctaaccagtgcccttagggcattggttaaggaa 6770939  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 25102363 - 25102298
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||    
T  25102363 ccaatgctatatttctatttttatctcattatccaatgtcccaagggcaatggttagcattctcct 25102298  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 29915616 - 29915551
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  29915616 ccaatactatatttttatttttatccccttatccaacgccccaagggcaatggttagcattctcct 29915551  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 29964769 - 29964704
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  29964769 ccaatactatatttttatttttatccccttatccaacgccccaagggcaatggttagcattctcct 29964704  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 48136764 - 48136699
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||    
T  48136764 ccaatgctatatttctatttttattcccttatccaataccccaaggacaatggttagcattctcct 48136699  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 36730193 - 36730126
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 253  Q
    |||| |||||||| ||||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  36730193 caatactatatttatatttttatccccttatccaatgccataagggcaatggttagcattctcctaaa 36730126  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 41346348 - 41346407
Alignment:
Q  191 ctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  41346348 ctatatttctatttttatccccttatccaatgccccaaggacaatggttaacattctcct 41346407  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 1803963 - 1804020
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  1803963 tatatttctatttttatccccttatccaatgccccaaggacaatgattagcattctcc 1804020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 44570549 - 44570492
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  44570549 aagggtcttgctaaccattgccctctgggcaatggttaaggaagccaaaagtagcatg 44570492  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 8715542 - 8715479
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||    
T  8715542 ccaatgctatatttctattttta-ccccttatccaatgccctaaggacaatggttagcattctcc 8715479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 9067429 - 9067366
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||    
T  9067429 ccaatgctatatttctattttta-ccccttatccaatgccctaaggacaatggttagcattctcc 9067366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 32415638 - 32415702
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 250  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||| |||||||||    
T  32415638 caatgctatatttctatttttatccctttatccaatgcctcaagggcaatgattaacattctcct 32415702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 44570427 - 44570363
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| |||||||||||||  ||||| ||||| |||||||||||||||||||||||||||||||    
T  44570427 ccaatgttatatttctattttgatccctttatcgaatgccccaagggcaatggttagcattctcc 44570363  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 4759890 - 4759827
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||  |||||||||||||||||||    
T  4759890 caatgctatatttctatttttatccctttatccaatgctccaaatgcaatggttagcattctcc 4759827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 10854803 - 10854862
Alignment:
Q  61 ttaagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||    
T  10854803 ttaagggtcttgctaaccattgccctcgtgacaatgattaaggaagccaaaagtagcatg 10854862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 37509179 - 37509242
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 248  Q
    ||||||||  ||||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  37509179 ccaatgctgcatttcaatttttatccccttatccaatgccccaaaggcaatggttagcattctc 37509242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 35306400 - 35306462
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattct 247  Q
    |||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||    
T  35306400 ccaatgttatatttctatttttatccccttatccaattgcccaagggcaatggttagtattct 35306462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 51817476 - 51817418
Alignment:
Q  62 taagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||    
T  51817476 taagggttttgttaaccattaccctgagggcaatggttaaggaagccaaaagtagcatg 51817418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 12050986 - 12051041
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||    
T  12050986 gggtcttgctaactattaccctcagggcaatggttaaggaagccaaaagtagcatg 12051041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 31647363 - 31647424
Alignment:
Q  186 caatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattct 247  Q
    ||||||||||||| ||||| ||||||||||| ||||| || |||| ||||||||||||||||    
T  31647363 caatgctatatttatatttttatccccttattcaatgtccgaaggacaatggttagcattct 31647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 46317554 - 46317615
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattc 246  Q
    |||||| ||||||||||||| ||||  ||||||||||| | |||||||||||||||||||||    
T  46317554 ccaatgttatatttctatttttatctacttatccaatgtctcaagggcaatggttagcattc 46317615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 8847493 - 8847429
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||| |||||| | | ||||||||    
T  8847493 ccaatgttatatttctatttttatccccttatccaatgtcccaagtgcaatgataaacattctcc 8847429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 29915738 - 29915685
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    |||||| ||| ||||||||| ||||||  |||||||||||||||||||||||||    
T  29915738 aagggtattgttaaccattgacctgagaacaatgattaaggaagccaaaagtag 29915685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 29964891 - 29964838
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    |||||| ||| ||||||||| ||||||  |||||||||||||||||||||||||    
T  29964891 aagggtattgttaaccattgacctgagaacaatgattaaggaagccaaaagtag 29964838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 44695705 - 44695648
Alignment:
Q  192 tatatttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||| ||||| ||||||||||||||||| ||||| | ||||| ||||||||||||    
T  44695705 tatatttatatttttatccccttatccaatgtcccaatgacaatgattagcattctcc 44695648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 10854927 - 10854992
Alignment:
Q  185 ccaatgctatatttcta----tttctatccccttatccaatgccccaagggcaatggttagcattc 246  Q
    |||||||||||||||||    | || |||||||||||||||||||||||||||||| ||| |||||    
T  10854927 ccaatgctatatttctacttttatccatccccttatccaatgccccaagggcaatgattaacattc 10854992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 31647253 - 31647307
Alignment:
Q  65 gggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||| | | || |||||| |||||||||||||||||||||||    
T  31647253 gggtcttgctaaccattgtc-tcagagcaatggttaaggaagccaaaagtagcatg 31647307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 20406715 - 20406661
Alignment:
Q  62 taagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    ||||||||||||||| || |||||| || ||||||||||||||| ||| ||||||    
T  20406715 taagggtcttgctaatcagtgccctaagagcaatgattaaggaatccataagtag 20406661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 36730293 - 36730259
Alignment:
Q  86 tgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    ||||||||||| |||||||||||||||||||||||    
T  36730293 tgagggcaatggttaaggaagccaaaagtagcatg 36730259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 46055804 - 46055754
Alignment:
Q  195 atttctatttctatccccttatccaatgccccaagggcaatggttagcatt 245  Q
    |||||||||| | | || ||||||||||| |||||||||||||||||||||    
T  46055804 atttctatttttgttcctttatccaatgctccaagggcaatggttagcatt 46055754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 8715667 - 8715607
Alignment:
Q  62 taagggtcttgctaaccat--tgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||  ||| ||| ||| |||| |||||||||| ||||||||||||    
T  8715667 taagggtcttgctaaccatattgctctgtgggtaatggttaaggaagctaaaagtagcatg 8715607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 9067554 - 9067494
Alignment:
Q  62 taagggtcttgctaaccat--tgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||||||||||||||||  ||| ||| ||| |||| |||||||||| ||||||||||||    
T  9067554 taagggtcttgctaaccatattgctctgtgggtaatggttaaggaagctaaaagtagcatg 9067494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 46317433 - 46317489
Alignment:
Q  63 aagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtagcatg 120  Q
    |||||| ||||||||||||||||| ||  ||||| |||||||||||||||||| ||||    
T  46317433 aagggttttgctaaccattgccctcaga-caatggttaaggaagccaaaagtaacatg 46317489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 18828 - 18780
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggca 233  Q
    ||||||| |||||||||||| ||||| |||| ||||||||| |||||||    
T  18828 ccaatgcaatatttctatttttatcctcttaaccaatgccctaagggca 18780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 4195441 - 4195473
Alignment:
Q  217 ccaatgccccaagggcaatggttagcattctcc 249  Q
    ||||||||||||| |||||||||||||||||||    
T  4195441 ccaatgccccaagagcaatggttagcattctcc 4195473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 4311 - 4249
Alignment:
Q  185 ccaatgctatatttctatttctatccccttatccaatgccccaagggcaatggttagcattct 247  Q
    |||||||||||||| ||||| ||||||  ||||||||| |||||  |||||| ||||||||||    
T  4311 ccaatgctatatttttatttttatccctctatccaatgtcccaaaagcaatgattagcattct 4249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 39534 - 39588
Alignment:
Q  62 taagggtcttgctaaccattgccctgagggcaatgattaaggaagccaaaagtag 116  Q
    |||||||||||||||||   ||||| ||||||||| |||||||| ||||||||||    
T  39534 taagggtcttgctaaccgaagccctcagggcaatggttaaggaaaccaaaagtag 39588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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