View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_high_8 (Length: 424)
Name: NF21293_high_8
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 45 - 416
Target Start/End: Original strand, 43602357 - 43602728
Alignment:
| Q |
45 |
attcagctattgcaataaacaaagttatagcaaacatctactaccactatatttcataacctcattaattaattacaccaaacttcatattcataaccca |
144 |
Q |
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| T |
43602357 |
attcagctattgcaataaacaaagttatagcaaacatctaccaccaatatatttcataacctcattaattaattacaccaaacttcatattcataaccca |
43602456 |
T |
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| Q |
145 |
caactcatcatcatcataacattaaccaatactacttactacacatcaaaccattgatcatgaaatgatctttcttttgaagagaaataaaacttactaa |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43602457 |
caactcatcatcatcataacattaaccaatactacttactacacatcaaaccattgatcatgaaatgatctttcttttgaagagaaatacaacttactaa |
43602556 |
T |
|
| Q |
245 |
gaaatatcaatggactctcccaactcacctgattttgcttttacatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaa |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602557 |
gaaatatcaatggactctcccaactcacctgattttgcttttacatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaa |
43602656 |
T |
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| Q |
345 |
aagaaacacctttctcaaaactctcatgtccaactttctcacgcagtcttcaaaactctccagtttcatctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602657 |
aagaaacacctttctcaaaactctcatgtccaactttctcacgcagtcttcaaaactctccagtttcatctc |
43602728 |
T |
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