View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21293_low_10 (Length: 426)

Name: NF21293_low_10
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21293_low_10
NF21293_low_10
[»] chr6 (2 HSPs)
chr6 (354-417)||(7212913-7212976)
chr6 (19-58)||(17940312-17940351)
[»] chr4 (1 HSPs)
chr4 (19-58)||(34056009-34056048)
[»] chr2 (1 HSPs)
chr2 (19-58)||(19167268-19167307)
[»] chr8 (1 HSPs)
chr8 (17-58)||(19394956-19394997)
[»] chr7 (1 HSPs)
chr7 (21-58)||(42688366-42688403)
[»] chr5 (1 HSPs)
chr5 (19-59)||(27066645-27066685)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 354 - 417
Target Start/End: Original strand, 7212913 - 7212976
Alignment:
Q  354 acctccctcttcctttgtcgtgccacactgtaaaactctcatctctctcgtcctttgcctttgc 417  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7212913 acctccctcttcctttgtcgcgccacactgtaaaactctcatctctctcgtcctttgcctttgc 7212976  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 17940351 - 17940312
Alignment:
Q  19 gattaagaggacatataatcagtctatgagattaggaatt 58  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  17940351 gattaagagaacatataatcagtttatgagattaggaatt 17940312  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 34056009 - 34056048
Alignment:
Q  19 gattaagaggacatataatcagtctatgagattaggaatt 58  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  34056009 gattaagagaacatataatcagtttatgagattaggaatt 34056048  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 19167268 - 19167307
Alignment:
Q  19 gattaagaggacatataatcagtctatgagattaggaatt 58  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  19167268 gattaagagaacatataatcagtttatgagattaggaatt 19167307  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 19394956 - 19394997
Alignment:
Q  17 cagattaagaggacatataatcagtctatgagattaggaatt 58  Q
    |||||||||||  |||||||||||| ||||||||||||||||    
T  19394956 cagattaagagagcatataatcagtttatgagattaggaatt 19394997  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 42688403 - 42688366
Alignment:
Q  21 ttaagaggacatataatcagtctatgagattaggaatt 58  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  42688403 ttaagagaacatataatcagtttatgagattaggaatt 42688366  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 27066685 - 27066645
Alignment:
Q  19 gattaagaggacatataatcagtctatgagattaggaatta 59  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  27066685 gattaagagagcatataatcagtttatgagattaggaatta 27066645  T

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