View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_12 (Length: 415)
Name: NF21293_low_12
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 28730301 - 28730058
Alignment:
| Q |
19 |
tttacactgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttctttgtctcatgaattgtaactctgaatt |
118 |
Q |
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| T |
28730301 |
tttacaccgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttctttgtctcatgaagtgaaactctgaatt |
28730202 |
T |
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| Q |
119 |
tgtagttagttcacactattatccatatatactctatgttgcttaactagttcgttaataaaacaatttgtggatttagtctttacagattttcttgaga |
218 |
Q |
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| T |
28730201 |
tgtagttaattcacactattatccatatatactctatgttgcttaactagttcgttaataa-------tgtggatttagtctttacagattttctt--ga |
28730111 |
T |
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| Q |
219 |
gattatcttgtgtatgatgtatcaattcatggtttcttacaatttgtgtatga |
271 |
Q |
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| T |
28730110 |
gattatcttgtgtatgatgtatcaattcatggtttcttacaatttgtgtatga |
28730058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 275 - 407
Target Start/End: Complemental strand, 28729001 - 28728869
Alignment:
| Q |
275 |
atctgtttttcatctgcagggccaaaatacgtgtgtgaattagatatcctaggattatagaagatgctagtttaagtacaatccatttcatagtacattt |
374 |
Q |
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| T |
28729001 |
atctgtttttcgtctgcagggccaaaatacgtgtgtgaattagatatactaggattatagaagaggctagtttaagtacaatccatttcatagtacattt |
28728902 |
T |
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| Q |
375 |
cctcctggacatttttctttctccatctctgct |
407 |
Q |
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| T |
28728901 |
cctcctggtcatttttctttcgccatctctgct |
28728869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 38120724 - 38120529
Alignment:
| Q |
19 |
tttacactgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttctttgtctcatgaattgtaactctgaatt |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |
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| T |
38120724 |
tttacactgttgtccatctaatgtagctaattcacacggttccttagttctttttagtttgtgctgcacttctttgtctcatgaagtgaaactttgaatt |
38120625 |
T |
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| Q |
119 |
tgtagttagttcacactattatccatatatactctatgttgcttaactagttcgttaataaaacaatttgtggatttagtctttacagattttcttga |
216 |
Q |
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| T |
38120624 |
tgtagttaattcacactattatcc--aactacactatgttgcttaaatagttcttcaataaaacaatttgtggatttagtctttacagattttcttga |
38120529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 3928143 - 3928106
Alignment:
| Q |
57 |
gttgcttagttctttttagtttgtgctgcacttctttg |
94 |
Q |
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| T |
3928143 |
gttgcttagatctttttagtttgtgcagcacttctttg |
3928106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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