View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21293_low_13 (Length: 396)

Name: NF21293_low_13
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21293_low_13
NF21293_low_13
[»] chr2 (12 HSPs)
chr2 (143-389)||(42280334-42280580)
chr2 (32-231)||(42268687-42268886)
chr2 (141-387)||(42259786-42260032)
chr2 (232-388)||(42268330-42268486)
chr2 (141-387)||(42254193-42254431)
chr2 (169-296)||(42313542-42313669)
chr2 (32-120)||(42280580-42280668)
chr2 (195-322)||(42308304-42308431)
chr2 (161-260)||(42285478-42285581)
chr2 (161-251)||(42272453-42272547)
chr2 (169-233)||(42308879-42308943)
chr2 (200-233)||(42309635-42309668)
[»] scaffold0002 (1 HSPs)
scaffold0002 (141-387)||(488621-488867)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 143 - 389
Target Start/End: Complemental strand, 42280580 - 42280334
Alignment:
Q  143 aaatattgtataaaacatttgcacaacttgctatcaagattaataaacaagcccttactacttacatgtgattctgtcacttcaagctttgagaattgtt 242  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42280580 aaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgaggattgtt 42280481  T
Q  243 tctctgccagcattaaatcttgccaactatttgagaaagcttctctgcaaagaacacattatgcaaatagccatcattattttatgcaaaaggtgaaaat 342  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  42280480 tctctgccagcattaaatcttgcaaactatttgagaaagcttctctgcaaagaacacattatgcaaatatccatcattattttatgcaaaaggtgaaaac 42280381  T
Q  343 gaaaacataagttggaaatgggaaataatttaatcaaacctatgcta 389  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  42280380 gaaaacataagatggaaatgggaaataatttaatcaaacctatgcta 42280334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 42268886 - 42268687
Alignment:
Q  32 cttaagaaaaaagacatctcaacaataaaggaaatagtaaaaactttagggtttatgtaaacctaaagaagtatccatagacacaactagtaagagttta 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268886 cttaagaaaaaagacatctcaacaataaaggaaatagtaaaaactttagggtttatgtaaacctaaagaagtatccatagacacaactagtaagagttta 42268787  T
Q  132 ctcaatacaaaaaatattgtataaaacatttgcacaacttgctatcaagattaataaacaagcccttactacttacatgtgattctgtcacttcaagctt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42268786 ctcaatacaaaaaatattgtataaaacatttgcacaacttgctatcaagattaataaacaagcccttactacttacatgcgattctgtcacttcaagctt 42268687  T

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Target: chr2; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 141 - 387
Target Start/End: Complemental strand, 42260032 - 42259786
Alignment:
Q  141 aaaaatattgtataaaacatttgcacaacttgctatcaagattaataaacaagcccttactacttacatgtgattctgtcacttcaagctttgagaattg 240  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42260032 aaaaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttg 42259933  T
Q  241 tttctctgccagcattaaatcttgccaactatttgagaaagcttctctgcaaagaacacattatgcaaatagccatcattattttatgcaaaaggtgaaa 340  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||    
T  42259932 tttctctgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattattttatggaaaaggtgaaa 42259833  T
Q  341 atgaaaacataagttggaaatgggaaataatttaatcaaacctatgc 387  Q
    | |||||| |||  |||||||| ||||||||||||||||| ||||||    
T  42259832 acgaaaacgtaatatggaaatgagaaataatttaatcaaaactatgc 42259786  T

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Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 232 - 388
Target Start/End: Complemental strand, 42268486 - 42268330
Alignment:
Q  232 tgagaattgtttctctgccagcattaaatcttgccaactatttgagaaagcttctctgcaaagaacacattatgcaaatagccatcattattttatgcaa 331  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42268486 tgagaattgtttctctgccagcattaaatcttgcaaactatttgagaaagcttctctgcaaagaacacattatgcaaatagccatcattattttatgcac 42268387  T
Q  332 aaggtgaaaatgaaaacataagttggaaatgggaaataatttaatcaaacctatgct 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268386 aaggtgaaaatgaaaacataagttggaaatgggaaataatttaatcaaacctatgct 42268330  T

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Target: chr2; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 141 - 387
Target Start/End: Complemental strand, 42254431 - 42254193
Alignment:
Q  141 aaaaatattgtataaaacatttgcacaacttgctatcaagattaataaacaagcccttactacttacatgtgattctgtcacttcaagctttgagaattg 240  Q
    ||||| ||||||||||| || ||||||||||| |||||| ||      ||||||||||||||||||||||||||||| |||||| || ||||||||||||    
T  42254431 aaaaacattgtataaaatatctgcacaacttgttatcaatat------acaagcccttactacttacatgtgattctctcactttaacctttgagaattg 42254338  T
Q  241 tttctctgccagcattaaatcttgccaactatttgagaaagcttctctgcaaagaacacattatgcaaatagccatcattattttatgcaaaaggtgaaa 340  Q
    |||||||||||   ||||||||||| |||||||||||||||||||||||||||| | |  ||||||||||| | |||||||||||||| |||||||| ||    
T  42254337 tttctctgccacgtttaaatcttgcaaactatttgagaaagcttctctgcaaag-atattttatgcaaatatcaatcattattttatggaaaaggtg-aa 42254240  T
Q  341 atgaaaacataagttggaaatgggaaataatttaatcaaacctatgc 387  Q
    | |||||| |||| |||||||| |||||||||||||||||| |||||    
T  42254239 acgaaaacgtaagatggaaatgagaaataatttaatcaaacttatgc 42254193  T

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Target: chr2; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 42313669 - 42313542
Alignment:
Q  169 cttgctatcaagattaataaacaagcccttactacttacatgtgattctgtcacttcaagctttgagaattgtttctctgccagcattaaatcttgccaa 268  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || |||||||| ||    
T  42313669 cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcatgctttgggaattgtttctctgccagctttgaatcttgcaaa 42313570  T
Q  269 ctatttgagaaagcttctctgcaaagaa 296  Q
    ||||||||||| | |||||| |||||||    
T  42313569 ctatttgagaatgtttctctacaaagaa 42313542  T

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Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 42280668 - 42280580
Alignment:
Q  32 cttaagaaaaaagacatctcaacaataaaggaaatagtaaaaactttagggtttatgtaaacctaaagaagtatccatagacacaacta 120  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  42280668 cttaagaaaaaagccatctcaacaataaaggaaatagtaaaaactctagggtttatgtaaaccttaagaagtatccatagacataacta 42280580  T

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Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 322
Target Start/End: Complemental strand, 42308431 - 42308304
Alignment:
Q  195 ccttactacttacatgtgattctgtcacttcaagctttgagaattgtttctctgccagcattaaatcttgccaactatttgagaaagcttctctgcaaag 294  Q
    |||| ||||||| |||||||||| | ||||||||||| | |||||||||||| |||||| || |||||||| ||||||||||||| | |||||| |||||    
T  42308431 ccttgctacttatatgtgattctttaacttcaagcttcgggaattgtttctcagccagctttgaatcttgcaaactatttgagaatgtttctctacaaag 42308332  T
Q  295 aacacattatgcaaatagccatcattat 322  Q
    |||| | |||||||||||||||||||||    
T  42308331 aacataatatgcaaatagccatcattat 42308304  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 42285581 - 42285478
Alignment:
Q  161 ttgcacaacttgctatcaagattaataaacaagcccttactactta----catgtgattctgtcacttcaagctttgagaattgtttctctgccagcatt 256  Q
    |||||| ||||| ||||||||| |||| |||||||| |||||||||    | || |||| ||||||||||||||||||||||||||||||||||| ||||    
T  42285581 ttgcacgacttgttatcaagatcaatatacaagcccgtactacttaattacgtgcgattttgtcacttcaagctttgagaattgtttctctgccaacatt 42285482  T
Q  257 aaat 260  Q
    ||||    
T  42285481 aaat 42285478  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 42272547 - 42272453
Alignment:
Q  161 ttgcacaacttgctatcaagattaataaacaagcccttactactta----catgtgattctgtcacttcaagctttgagaattgtttctctgcca 251  Q
    |||||| ||||| ||||||||| |||| |||||||| |||||||||    ||||  ||| |||||||||||||||||||||||||||||||||||    
T  42272547 ttgcacgacttgttatcaagatcaatatacaagcccgtactacttaattacatgccattttgtcacttcaagctttgagaattgtttctctgcca 42272453  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 42308943 - 42308879
Alignment:
Q  169 cttgctatcaagattaataaacaagcccttactacttacatgtgattctgtcacttcaagctttg 233  Q
    |||| ||||||||| || | ||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  42308943 cttgttatcaagatcaacagacatgccctcactacttacatgtgattctgtaacttcaagatttg 42308879  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 42309668 - 42309635
Alignment:
Q  200 ctacttacatgtgattctgtcacttcaagctttg 233  Q
    |||||||||||||||||||| |||||||||||||    
T  42309668 ctacttacatgtgattctgtaacttcaagctttg 42309635  T

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Target: scaffold0002 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 141 - 387
Target Start/End: Complemental strand, 488867 - 488621
Alignment:
Q  141 aaaaatattgtataaaacatttgcacaacttgctatcaagattaataaacaagcccttactacttacatgtgattctgtcacttcaagctttgagaattg 240  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  488867 aaaaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttg 488768  T
Q  241 tttctctgccagcattaaatcttgccaactatttgagaaagcttctctgcaaagaacacattatgcaaatagccatcattattttatgcaaaaggtgaaa 340  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||    
T  488767 tttctctgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattattttatggaaaaggtgaaa 488668  T
Q  341 atgaaaacataagttggaaatgggaaataatttaatcaaacctatgc 387  Q
    | |||||| |||  |||||||| ||||||||||||||||| ||||||    
T  488667 acgaaaacgtaatatggaaatgagaaataatttaatcaaaactatgc 488621  T

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