View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21293_low_14 (Length: 362)

Name: NF21293_low_14
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21293_low_14
NF21293_low_14
[»] chr1 (2 HSPs)
chr1 (18-362)||(4206057-4206399)
chr1 (256-355)||(24988280-24988379)
[»] chr5 (3 HSPs)
chr5 (255-351)||(39222585-39222684)
chr5 (225-347)||(35192751-35192869)
chr5 (256-355)||(14643585-14643683)
[»] chr4 (1 HSPs)
chr4 (213-357)||(34667766-34667906)
[»] chr3 (4 HSPs)
chr3 (304-362)||(47043557-47043615)
chr3 (284-362)||(19902972-19903049)
chr3 (304-362)||(46495156-46495214)
chr3 (309-361)||(16930918-16930970)
[»] chr6 (3 HSPs)
chr6 (256-353)||(6223862-6223959)
chr6 (300-362)||(17902294-17902356)
chr6 (313-358)||(27777662-27777707)
[»] chr7 (1 HSPs)
chr7 (310-362)||(17115382-17115434)
[»] chr8 (1 HSPs)
chr8 (313-362)||(42156514-42156563)
[»] chr2 (1 HSPs)
chr2 (313-362)||(7485166-7485215)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 4206057 - 4206399
Alignment:
Q  18 ccctcaatatctcttgactgaaaaatgctctcccgaagttatctattagatgtattnnnnnnnnnnnnnnnntgtcctccgagagttatctttcgaattt 117  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||                ||||||||||||||||||||||||||||    
T  4206057 ccctcaatatctcttgactgaaaaatgccctcccaaagttatctattagatgtattaaaataaaataaaaaatgtcctccgagagttatctttcgaattt 4206156  T
Q  118 tttagggggcctaagagacatcgtggaagtatgaaaagagcgctcaattatttgttacgttnnnnnnntgtaaatgaataagttcaacccaaaaagtgtg 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||    
T  4206157 tttagggggcctaagagacatagtggaagtatgaaaagagcgctcaattatttgttacgttaaaaaaatgtaaatgaataagttcaaaccaaaaagtgtg 4206256  T
Q  218 agaaagatgataaagatcttagctagaagttgtttgtattttatgttattgattagactatatatcttttttgtattagttgcaacgatgactatttttt 317  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  4206257 agaaagatgaaaaagatcttagctagaagttgtttgtattttatgttatt-attagattatagatcttttttgtattagttgcaacgatgactatttttt 4206355  T
Q  318 atatttatggatgttatttgcaatttaaatagaagattactcttt 362  Q
    |||||||||||| ||| || |||||||||||||||||||||||||    
T  4206356 atatttatggatatta-ttacaatttaaatagaagattactcttt 4206399  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 24988280 - 24988379
Alignment:
Q  256 ttttatgttattgattagactatatatcttttttgtattagttgcaacgatgactattttttatatttatggatgttatttgcaatttaaatagaagatt 355  Q
    |||||| ||||| |||||| |||| ||||||||||| |||||| | | ||||| |||||||||| |||| | || | |||| ||||||||||||||||||    
T  24988280 ttttatattatttattagaatatagatcttttttgtgttagttaccatgatgattattttttatgtttacgaatttcattttcaatttaaatagaagatt 24988379  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 255 - 351
Target Start/End: Complemental strand, 39222684 - 39222585
Alignment:
Q  255 attttatgttattgattagactatatatcttttttgtattagttgcaacgatgacta---ttttttatatttatggatgttatttgcaatttaaatagaa 351  Q
    |||||||||||||||||||| |||  || |||||||| ||||||  || ||||||||   |||||||| | |||||||||||||||||| ||||||||||    
T  39222684 attttatgttattgattagattatgcatattttttgtgttagttataatgatgactaattttttttatgtctatggatgttatttgcaagttaaatagaa 39222585  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 35192751 - 35192869
Alignment:
Q  225 tgataaagatcttagctagaagttgtttgtattttatgttattgattagactatatatcttttttgtattagttgcaacgatgactattttttatattta 324  Q
    |||||||||| || ||| |||||||| |   |||||| |||||||||||| |||  || |||||||| |||||| |||   ||||| |||||||| ||||    
T  35192751 tgataaagatattcgcttgaagttgtat---ttttatattattgattagaatattgatattttttgtgttagttacaatagtgact-ttttttattttta 35192846  T
Q  325 tggatgttatttgcaatttaaat 347  Q
    ||||| |||||| ||||||||||    
T  35192847 tggatcttattttcaatttaaat 35192869  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 14643585 - 14643683
Alignment:
Q  256 ttttatgttattgattagactatatatcttttttgtattagttgcaacgatgactattttttatatttatggatgttatttgcaatttaaatagaagatt 355  Q
    |||||| |||||||||||| |||  ||||||||  | |||||  ||| | |||||||||||||| ||||| |||||||||| |||| |||||| ||||||    
T  14643585 ttttattttattgattagaatatgaatcttttta-tgttagtgacaatgttgactattttttatgtttatagatgttatttacaatataaatataagatt 14643683  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 357
Target Start/End: Complemental strand, 34667906 - 34667766
Alignment:
Q  213 gtgtgagaaagatgataaagatcttagctagaagttgtttgtattttatgttattgattagactat-atatcttttttgtattagttgcaacgatgacta 311  Q
    ||||||||| ||||||||||||  ||||| |||     ||||||||| |||||||||||||| | | || | |||||||||||| || ||| ||||| ||    
T  34667906 gtgtgagaatgatgataaagatagtagcttgaa----attgtattttttgttattgattagaatgtaattttttttttgtattaattacaatgatgatta 34667811  T
Q  312 ttttttatatttatggatgttatttgcaatttaaatagaagattac 357  Q
    |||||||| |||||||||||||| | ||||| ||||| ||||||||    
T  34667810 ttttttatgtttatggatgttatctacaattaaaata-aagattac 34667766  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 47043615 - 47043557
Alignment:
Q  304 gatgactattttttatatttatggatgttatttgcaatttaaatagaagattactcttt 362  Q
    |||||||||||||| |||||||| ||||||||| || |||||||||||||||| |||||    
T  47043615 gatgactattttttgtatttatgaatgttattttcagtttaaatagaagattattcttt 47043557  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 19903049 - 19902972
Alignment:
Q  284 ttttttgtattagttgcaacgatgactattttttatatttatggatgttatttgcaatttaaatagaagattactcttt 362  Q
    ||||||||||||||| ||| ||| |||| ||||| ||| || || |||||||| |||||||||||||||| || |||||    
T  19903049 ttttttgtattagttacaatgataactagttttt-tatgtacgggtgttattttcaatttaaatagaagaatattcttt 19902972  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 46495214 - 46495156
Alignment:
Q  304 gatgactattttttatatttatggatgttatttgcaatttaaatagaagattactcttt 362  Q
    ||||||||||||||| ||||| ||| | ||||  |||||||||||||||||| ||||||    
T  46495214 gatgactattttttagatttacggacgatattcacaatttaaatagaagatttctcttt 46495156  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 16930918 - 16930970
Alignment:
Q  309 ctattttttatatttatggatgttatttgcaatttaaatagaagattactctt 361  Q
    ||||||||||| |||| |||| |||||| ||||| |||||||||||| |||||    
T  16930918 ctattttttatgtttacggattttattttcaattaaaatagaagattgctctt 16930970  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 353
Target Start/End: Complemental strand, 6223959 - 6223862
Alignment:
Q  256 ttttatgttattgattagactatatatcttttttgtattagttgcaacgatgactattttttatatttatggatgttatttgcaatttaaatagaaga 353  Q
    ||||||||||||||||||| |||  || |||||| | |||||| |||  || |||||||||||| ||||||||||| |||  |||| |||||||||||    
T  6223959 ttttatgttattgattagaatatgaatattttttatgttagttacaataattactattttttatgtttatggatgtcattcacaatataaatagaaga 6223862  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 17902356 - 17902294
Alignment:
Q  300 caacgatgactattttttatatttatggatgttatttgcaatttaaatagaagattactcttt 362  Q
    ||||| |||||||| ||||| ||||  |||||||||| ||||||||||||||||||| |||||    
T  17902356 caacggtgactattgtttatgtttaccgatgttattttcaatttaaatagaagattattcttt 17902294  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 27777707 - 27777662
Alignment:
Q  313 tttttatatttatggatgttatttgcaatttaaatagaagattact 358  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||    
T  27777707 tttttatatttatggatgttatttacaatataagtagaagattact 27777662  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 17115434 - 17115382
Alignment:
Q  310 tattttttatatttatggatgttatttgcaatttaaatagaagattactcttt 362  Q
    |||| ||||| ||||||||| |||||| |||||||||||||||||| ||||||    
T  17115434 tattctttatgtttatggatattatttacaatttaaatagaagattgctcttt 17115382  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 42156563 - 42156514
Alignment:
Q  313 tttttatatttatggatgttatttgcaatttaaatagaagattactcttt 362  Q
    ||||||| |||| |||||| |||| |||||||||||||||||| ||||||    
T  42156563 tttttatgtttacggatgtcattttcaatttaaatagaagattgctcttt 42156514  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 7485166 - 7485215
Alignment:
Q  313 tttttatatttatggatgttatttgcaatttaaatagaagattactcttt 362  Q
    ||||||| ||||||||| |||||| ||||||||||||| |||| ||||||    
T  7485166 tttttatctttatggattttattttcaatttaaatagatgattgctcttt 7485215  T

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