View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_15 (Length: 359)
Name: NF21293_low_15
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 92 - 359
Target Start/End: Complemental strand, 9301346 - 9301080
Alignment:
| Q |
92 |
aaaagaacaaaatacttgcatcagaatctcgggtctacatcatccaagnnnnnnnntttggactataaaattgatgaaactccaggatataatttttaga |
191 |
Q |
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| T |
9301346 |
aaaagaacaaaatacttgcatcagaatctcgggtctacatcatccaagaaaaaaa-tttggactataaaattgatgtaactccaggatataatttttaga |
9301248 |
T |
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| Q |
192 |
ctaaactgaccaaacctaaaaaactaaacaagtaaggtcaattccaagattcagtgtggaattttggtaatttcaaagatcaaattggtcaataataata |
291 |
Q |
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| T |
9301247 |
ctaaactgaccaaacctaaagaactaaacaagtaaggtcaattccaagattcagtgtggaattttggtaatttcaaagatcaaattggtcaataataata |
9301148 |
T |
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| Q |
292 |
ataattagaaggactaaattgttgattcaaaaaatgatatagtctgagaagaataaacaatctatagt |
359 |
Q |
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| T |
9301147 |
ataattagaaggactaaattgttgattcaaaaaatgatatagtctgagaagaataaacaatctatagt |
9301080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 9301441 - 9301372
Alignment:
| Q |
13 |
aaaatgaggtggagggagcatttcttttcaacttattgttgtacttatgtaaaataaaaacttaatgttg |
82 |
Q |
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| T |
9301441 |
aaaatgaggtggagggagcatttcttttcaacttattgttgtacttatgtaaaataaaaacttaatgttg |
9301372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 51429039 - 51429070
Alignment:
| Q |
108 |
tgcatcagaatctcgggtctacatcatccaag |
139 |
Q |
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| T |
51429039 |
tgcatcagaatctcgggtctacatcatccaag |
51429070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 51429349 - 51429380
Alignment:
| Q |
108 |
tgcatcagaatctcgggtctacatcatccaag |
139 |
Q |
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| T |
51429349 |
tgcatcagaatctcgggtctacatcatccaag |
51429380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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