View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21293_low_16 (Length: 357)

Name: NF21293_low_16
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21293_low_16
NF21293_low_16
[»] chr3 (18 HSPs)
chr3 (1-357)||(36002258-36002614)
chr3 (253-311)||(36023603-36023661)
chr3 (253-357)||(23351901-23352005)
chr3 (13-69)||(36023375-36023431)
chr3 (28-182)||(23463039-23463193)
chr3 (28-182)||(23439668-23439822)
chr3 (258-357)||(23439874-23439973)
chr3 (28-122)||(23386037-23386131)
chr3 (28-70)||(23447048-23447090)
chr3 (258-316)||(23472409-23472467)
chr3 (28-70)||(23478348-23478390)
chr3 (252-357)||(23386234-23386339)
chr3 (252-357)||(23404608-23404713)
chr3 (29-122)||(23472204-23472297)
chr3 (30-70)||(23498829-23498869)
chr3 (28-122)||(23404408-23404502)
chr3 (28-70)||(23453818-23453860)
chr3 (252-316)||(23463239-23463303)
[»] chr2 (2 HSPs)
chr2 (1-198)||(16337574-16337771)
chr2 (1-198)||(16121397-16121594)
[»] chr4 (2 HSPs)
chr4 (18-198)||(12897074-12897254)
chr4 (252-313)||(12896971-12897032)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 36002258 - 36002614
Alignment:
Q  1 aacaagtatatacaaacacattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcag 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002258 aacaagtatatataaacacattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcag 36002357  T
Q  101 cacagaagcttgctggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcacaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002358 cacagaagcttgctggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcacaat 36002457  T
Q  201 ggatccttcatttcttccatttgtcagaaatatattatgtaaactattaaggatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36002458 ggatccttcatttcttccatttgtcagaaatatattatgtaaactattaaggatatgaagatatcttaagttggtcatgcttttaaatgaagcagagctc 36002557  T
Q  301 aagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaacttcagtt 357  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36002558 aagtatagatccccaaagtcacaaatatcgaaaaatataacttcaacaacttcagtt 36002614  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 36023603 - 36023661
Alignment:
Q  253 atatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatc 311  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  36023603 atatgaagacatcttaagttggtcatgcttttaaaggaatcagaggtcaagtatagatc 36023661  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 23351901 - 23352005
Alignment:
Q  253 atatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaactt 352  Q
    |||| ||||||||||||||| ||||| |||||||||||| ||||  ||||||||||||||||||  ||   | ||||||| | |||| ||||||||||||    
T  23351901 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttctgtactatcgaatattataccttccacaactt 23352000  T
Q  353 cagtt 357  Q
    |||||    
T  23352001 cagtt 23352005  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 36023375 - 36023431
Alignment:
Q  13 caaacacattaattaatttgtacctgaattccatcccatagctttttaagtttgcta 69  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||    
T  36023375 caaacacattaattaatttgtacctgaattccatcccaaagcttttttagcttgcta 36023431  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 23463039 - 23463193
Alignment:
Q  28 atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaagaattaa 127  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||   |||||| ||| | ||||||  |||||||||| ||| ||| ||||||||| | ||    
T  23463039 atttgtacctgaactccatcccagagctttttaagcttgctatgactcatgcaaagatatacaagcatttcagcacaaaaggttgatggcaaagactcaa 23463138  T
Q  128 gtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagacc 182  Q
    |   | ||  | |||||  ||| ||||||||||||||||| | ||||||||||||    
T  23463139 gacagtatcttacccatagaagatacctcaatttatcagaaatccactcaagacc 23463193  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 23439668 - 23439822
Alignment:
Q  28 atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaagaattaa 127  Q
    ||||||||||||| |||||| || || |||||||| |||||||  ||||||||||| | ||||||  |||||||||| ||| ||| ||| ||||| | ||    
T  23439668 atttgtacctgaactccatctcagagatttttaagcttgctatgagtcatgctaagctctacaagcatttcagcacaaaagtttgatggaaaagactaaa 23439767  T
Q  128 gtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagacc 182  Q
    |     ||   ||||||| ||||||||||||||||||||| | |||||| |||||    
T  23439768 gacaatatccctcccattgaaggtacctcaatttatcagaaagccactcgagacc 23439822  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 357
Target Start/End: Original strand, 23439874 - 23439973
Alignment:
Q  258 aagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaacttcagtt 357  Q
    ||||||||||||||| | ||| ||| |||||||| ||||  ||||||||||||||||||  ||   | ||||||| | |||| |||||||||||||||||    
T  23439874 aagatatcttaagtttgccatccttctaaaggaatcagacttcaagtatagatccccaacttccgtagtatcgaatattataccttccacaacttcagtt 23439973  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 23386037 - 23386131
Alignment:
Q  28 atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaaga 122  Q
    ||||||||||||| ||||||||| ||||||||||| ||||| |   |||||| ||| | ||||||  |||||||||| ||| ||| |||||||||    
T  23386037 atttgtacctgaactccatcccagagctttttaagcttgctttgattcatgcaaagctctacaagcatttcagcacaaaaggttgatggcaaaga 23386131  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 23447048 - 23447090
Alignment:
Q  28 atttgtacctgaattccatcccatagctttttaagtttgctat 70  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  23447048 atttgtacctgaactccatcccatagctttttaagcttgctat 23447090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 23472409 - 23472467
Alignment:
Q  258 aagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 316  Q
    ||||||||||||||| ||||| ||| |||||||| ||||  ||||||||||||||||||    
T  23472409 aagatatcttaagtttgtcatccttctaaaggaatcagacttcaagtatagatccccaa 23472467  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 23478348 - 23478390
Alignment:
Q  28 atttgtacctgaattccatcccatagctttttaagtttgctat 70  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  23478348 atttgtacctgaactccatcccatagctttttaagcttgctat 23478390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 23386234 - 23386339
Alignment:
Q  252 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaact 351  Q
    ||||| |||||||||||| || ||||| ||| |||||||| ||||  ||||||||||||||||||  ||   | |||| || | |||| |||||||||||    
T  23386234 gatattaagatatcttaaatttgtcatccttctaaaggaatcagacttcaagtatagatccccaacttccgtactatccaatattataccttccacaact 23386333  T
Q  352 tcagtt 357  Q
    ||||||    
T  23386334 tcagtt 23386339  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 23404608 - 23404713
Alignment:
Q  252 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaact 351  Q
    ||||| ||||||||||||||| ||||| ||| |||||||| ||||  ||||||| | ||||||||  ||   | ||||||| | |||| |||||||||||    
T  23404608 gatattaagatatcttaagtttgtcatccttctaaaggaatcagacttcaagtaaatatccccaacatccgtactatcgaatattataccttccacaact 23404707  T
Q  352 tcagtt 357  Q
    ||||||    
T  23404708 tcagtt 23404713  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 23472204 - 23472297
Alignment:
Q  29 tttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaaga 122  Q
    |||||||||||| ||||||||| ||||||||||| |||||||  ||||||  ||| | ||||||  |||||||||| ||| ||| ||| |||||    
T  23472204 tttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga 23472297  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 23498829 - 23498869
Alignment:
Q  30 ttgtacctgaattccatcccatagctttttaagtttgctat 70  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  23498829 ttgtacctgaactccatcccatagctttttaagcttgctat 23498869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 23404408 - 23404502
Alignment:
Q  28 atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaaga 122  Q
    ||||||||||||| ||||||||| ||||||||||| ||||| |  | ||||| ||| | ||||||  |||||||||| ||  ||| |||||||||    
T  23404408 atttgtacctgaactccatcccagagctttttaagcttgctttgagccatgcaaagctctacaagcatttcagcacaaaaagttgatggcaaaga 23404502  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 23453818 - 23453860
Alignment:
Q  28 atttgtacctgaattccatcccatagctttttaagtttgctat 70  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||    
T  23453818 atttgtacctgaactccatcccagagctttttaagcttgctat 23453860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 23463239 - 23463303
Alignment:
Q  252 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 316  Q
    |||||||||||||||||| || ||||| ||| |||||||| ||||  ||||||| | ||||||||    
T  23463239 gatatgaagatatcttaaatttgtcatccttctaaaggaatcagacttcaagtaaatatccccaa 23463303  T

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Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 16337771 - 16337574
Alignment:
Q  1 aacaagtatatacaaacacattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcag 100  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||||||| |||| ||    
T  16337771 aacaagtatataaaaacacattaattaatttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttgtacaaggttttgag 16337672  T
Q  101 cacagaagcttgctggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 198  Q
    |||| ||| ||| ||||||||| | |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  16337671 cacaaaaggttgatggcaaagattcaagtggaaatgattcccaatgaaggtacctcaatttatcagacaaccactcaagaccttcttggagatgcaca 16337574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 16121397 - 16121594
Alignment:
Q  1 aacaagtatatacaaacacattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcag 100  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||| |||||||||||||| |||||| |||| ||    
T  16121397 aacaagtatataaaaacacattaattaatttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttctacaagcttttgag 16121496  T
Q  101 cacagaagcttgctggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 198  Q
     ||| ||| ||| ||||||||| | |||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||| || || ||||||    
T  16121497 gacaaaaggttgatggcaaagactcaagtggaaatgattcccaatgaaggtagctcaatttatcagacaaccactcaagaccttcttggagatgcaca 16121594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 12897254 - 12897074
Alignment:
Q  18 acattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggc 117  Q
    |||||||| ||| |||||||||||| ||| ||| ||||||||||| ||||||| |  ||||||||||||||||||   ||| ||||| ||| ||| ||||    
T  12897254 acattaataaatgtgtacctgaatttcattccaaagctttttaagcttgctatggcgcatgctaagttgtacaagccattcggcacaaaaggttgatggc 12897155  T
Q  118 aaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 198  Q
    ||||| | ||||||||||| |||||| | ||||| ||||||||||||||||||||| |||||||||||| | |||||||||    
T  12897154 aaagactcaagtgggaatgcttcccaataaaggtgcctcaatttatcagacaaccattcaagaccttcaaggaggtgcaca 12897074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 12897032 - 12896971
Alignment:
Q  252 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccc 313  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  12897032 gatatgaagatatcttaagttggtcatgtttttaaatgaatcagagctcaagtatagatccc 12896971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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