View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21293_low_18 (Length: 335)

Name: NF21293_low_18
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21293_low_18
NF21293_low_18
[»] chr7 (33 HSPs)
chr7 (205-328)||(8610644-8610767)
chr7 (185-326)||(8602694-8602835)
chr7 (185-327)||(8591358-8591500)
chr7 (185-311)||(7876850-7876976)
chr7 (193-311)||(8647669-8647787)
chr7 (191-311)||(8582629-8582749)
chr7 (225-311)||(3148371-3148457)
chr7 (235-323)||(8660254-8660342)
chr7 (235-311)||(6790420-6790496)
chr7 (187-311)||(8635515-8635639)
chr7 (235-324)||(1302321-1302410)
chr7 (222-311)||(8577286-8577375)
chr7 (214-311)||(27829361-27829458)
chr7 (191-311)||(8572556-8572676)
chr7 (235-311)||(10493017-10493093)
chr7 (200-328)||(29576988-29577116)
chr7 (15-70)||(8546171-8546226)
chr7 (193-311)||(8668433-8668551)
chr7 (33-70)||(8559890-8559927)
chr7 (238-311)||(13332166-13332239)
chr7 (191-287)||(8568804-8568900)
chr7 (22-70)||(8582246-8582294)
chr7 (223-311)||(17261390-17261478)
chr7 (19-70)||(8576869-8576920)
chr7 (235-312)||(8104075-8104152)
chr7 (33-70)||(8602531-8602568)
chr7 (247-311)||(8655371-8655435)
chr7 (213-311)||(8546663-8546761)
chr7 (191-257)||(29581235-29581301)
chr7 (235-312)||(8016308-8016385)
chr7 (33-70)||(8591195-8591232)
chr7 (33-70)||(29577243-29577280)
chr7 (235-287)||(8584576-8584628)
[»] chr1 (3 HSPs)
chr1 (235-323)||(4677544-4677632)
chr1 (235-323)||(15596069-15596157)
chr1 (213-324)||(34465251-34465362)
[»] chr2 (9 HSPs)
chr2 (222-299)||(12244431-12244508)
chr2 (235-328)||(16656599-16656692)
chr2 (235-324)||(43626330-43626419)
chr2 (222-305)||(12257936-12258019)
chr2 (214-305)||(12235787-12235878)
chr2 (222-305)||(14705460-14705543)
chr2 (226-287)||(12000334-12000395)
chr2 (214-305)||(7543266-7543357)
chr2 (222-287)||(16661106-16661171)
[»] chr5 (2 HSPs)
chr5 (232-311)||(28220954-28221033)
chr5 (235-311)||(42554203-42554279)
[»] chr4 (5 HSPs)
chr4 (193-311)||(9323080-9323198)
chr4 (193-311)||(9377559-9377677)
chr4 (193-311)||(9335052-9335169)
chr4 (222-287)||(30776114-30776179)
chr4 (222-287)||(35133451-35133516)
[»] chr6 (1 HSPs)
chr6 (235-266)||(28911324-28911355)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 8610644 - 8610767
Alignment:
Q  205 gtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttcctt 304  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8610644 gtgttagctgggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttcctt 8610743  T
Q  305 gttcattatagataatctctgctc 328  Q
    | ||||||| ||| ||||| ||||    
T  8610744 gctcattatggattatctcagctc 8610767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 8602694 - 8602835
Alignment:
Q  185 aagataaattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaaga 284  Q
    |||||||||||||| ||||||||||  ||||||| |||||||| || ||||| ||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  8602694 aagataaattaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaaga 8602793  T
Q  285 aggagtggttctgtttccttgttcattatagataatctctgc 326  Q
    |||||| |||||||||||||| ||||| |  |||||||||||    
T  8602794 aggagtagttctgtttccttgatcattgtgaataatctctgc 8602835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 327
Target Start/End: Original strand, 8591358 - 8591500
Alignment:
Q  185 aagataaattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaaga 284  Q
    |||||||||||||  ||| |||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||    
T  8591358 aagataaattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaaga 8591457  T
Q  285 aggagtggttctgtttccttgttcattatagataatctctgct 327  Q
    ||| ||  |||| |||||||| ||||| |  ||||||||||||    
T  8591458 aggtgtaattctatttccttgatcattgtgaataatctctgct 8591500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 185 - 311
Target Start/End: Complemental strand, 7876976 - 7876850
Alignment:
Q  185 aagataaattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaaga 284  Q
    ||||||| |||||| ||| |||||| | |||||| || ||||| || ||||| ||||||||||||||||||||||||||||  | |||||||||||||||    
T  7876976 aagataagttaccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaaga 7876877  T
Q  285 aggagtggttctgtttccttgttcatt 311  Q
    ||| || |||||||| |||||||||||    
T  7876876 aggtgttgttctgttgccttgttcatt 7876850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 8647669 - 8647787
Alignment:
Q  193 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 292  Q
    |||||| ||| |||||| |  ||||| |||||||| || |||||||| |||||||||||||||||||||||||| | |||||||||||||||||| || |    
T  8647669 ttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtag 8647768  T
Q  293 ttctgtttccttgttcatt 311  Q
    ||||||||||||| |||||    
T  8647769 ttctgtttccttgatcatt 8647787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 191 - 311
Target Start/End: Original strand, 8582629 - 8582749
Alignment:
Q  191 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagt 290  Q
    ||||||||||||||||||| | |||||| ||||||||||| ||||| ||||||||||||||||| ||||||  || ||  ||||||||| ||||||| ||    
T  8582629 aattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgt 8582728  T
Q  291 ggttctgtttccttgttcatt 311  Q
     ||| |||||||||| |||||    
T  8582729 tgttttgtttccttgatcatt 8582749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 3148371 - 3148457
Alignment:
Q  225 agcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    |||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| ||||| |||||    
T  3148371 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcatt 3148457  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 8660254 - 8660342
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctc 323  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| ||||| || ||| |||||||||| || || ||||| |||||    
T  8660254 ttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctc 8660342  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 6790420 - 6790496
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    |||||||||||||| ||||||||||| ||||| | |||||||||||||||||| |||||| |||| ||||| |||||    
T  6790420 ttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcatt 6790496  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 311
Target Start/End: Complemental strand, 8635639 - 8635515
Alignment:
Q  187 gataaattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaag 286  Q
    ||||| |||||| ||| ||| || | |||||| || | ||| |||||||| |||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  8635639 gataagttaccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaag 8635540  T
Q  287 gagtggttctgtttccttgttcatt 311  Q
    | ||| ||||||| ||||| |||||    
T  8635539 gtgtgattctgttcccttgctcatt 8635515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 1302321 - 1302410
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctct 324  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||||||| || || ||| |||| ||||| || || ||||| ||||||    
T  1302321 ttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctct 1302410  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 8577286 - 8577375
Alignment:
Q  222 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    ||||||||| ||||| |||||||| |||||||| ||||||  ||  |  ||||||||| ||||||||||||||||||||||||| |||||    
T  8577286 agcagcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcatt 8577375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 27829458 - 27829361
Alignment:
Q  214 gggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| || |  || | |||||||||| ||||||| || ||  |||| |||||||||||    
T  27829458 gggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgtcttgttgccttgttcatt 27829361  T

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Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 311
Target Start/End: Original strand, 8572556 - 8572676
Alignment:
Q  191 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagt 290  Q
    |||||||| ||||||| || | ||| || | ||||||||| ||||| ||||||||||| ||||| ||||||  || ||  ||||||||| |||| |||||    
T  8572556 aattaccaaagatagtattggatggattagtagcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagt 8572655  T
Q  291 ggttctgtttccttgttcatt 311  Q
     |||||||||||||| |||||    
T  8572656 tgttctgtttccttggtcatt 8572676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 10493093 - 10493017
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    |||||||||||||| ||||||||||||||||    |||||||||||||||||| || ||||| |||||||| |||||    
T  10493093 ttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcatt 10493017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 29577116 - 29576988
Alignment:
Q  200 agatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtt 299  Q
    |||||||||| | ||||||||| ||||| || ||||||||||||| |||||| |||||| |   ||||| |||||| |||| |||||| |||||||| ||    
T  29577116 agatagtgttggttgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctatt 29577017  T
Q  300 tccttgttcattatagataatctctgctc 328  Q
     ||||| ||||| | ||| ||||| ||||    
T  29577016 gccttgatcattgtggatgatctcagctc 29576988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 8546171 - 8546226
Alignment:
Q  15 atcattctgaacaatgatatcactgtatttccttccaattaacctctttgcatctg 70  Q
    |||||||||||||| |  |||||| |||||||||||||||||||||||||||||||    
T  8546171 atcattctgaacaaaggaatcactatatttccttccaattaacctctttgcatctg 8546226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 8668433 - 8668551
Alignment:
Q  193 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 292  Q
    |||||| ||||||||||  | ||||| | ||||| ||| || ||||||||||| |||||||||||||| ||||    |||||||||||||||||| ||      
T  8668433 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgtta 8668532  T
Q  293 ttctgtttccttgttcatt 311  Q
    ||| ||||||||| |||||    
T  8668533 ttcggtttccttgatcatt 8668551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 8559890 - 8559927
Alignment:
Q  33 atcactgtatttccttccaattaacctctttgcatctg 70  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8559890 atcactgtatttccttccaattaacctctttgcatctg 8559927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 13332239 - 13332166
Alignment:
Q  238 gcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    ||||||||||||||||| ||||||||||    |||||||||||||||||| || ||||| |||||||| |||||    
T  13332239 gcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcatt 13332166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 8568804 - 8568900
Alignment:
Q  191 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 287  Q
    |||||||| || ||||||| | ||| || ||||||||||| ||||| ||||||||||||||||| ||||||   | || |||||||||| |||||||    
T  8568804 aattaccaaaggtagtgttggttggattagaagcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaagg 8568900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 8582246 - 8582294
Alignment:
Q  22 tgaacaatgatatcactgtatttccttccaattaacctctttgcatctg 70  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||    
T  8582246 tgaacaatggaatcactatatttccttccaattaacctctttgcatctg 8582294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 17261390 - 17261478
Alignment:
Q  223 gcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    |||||||| || ||||| |||||||| |||||||||| ||| | ||  ||||||||||||||||||||  || |||||||||| |||||    
T  17261390 gcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcatt 17261478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 8576869 - 8576920
Alignment:
Q  19 ttctgaacaatgatatcactgtatttccttccaattaacctctttgcatctg 70  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||| |||||    
T  8576869 ttctgaacaatggaatcactatatttccttccaattaacctctttgtatctg 8576920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 8104075 - 8104152
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatta 312  Q
    |||||||||||||| |||||||||| |  ||||| |||||||||| |||| || || |||||||| ||||| ||||||    
T  8104075 ttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatta 8104152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 8602531 - 8602568
Alignment:
Q  33 atcactgtatttccttccaattaacctctttgcatctg 70  Q
    |||||| |||||||||||||||||||||||||||||||    
T  8602531 atcactatatttccttccaattaacctctttgcatctg 8602568  T

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Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 8655371 - 8655435
Alignment:
Q  247 ccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    |||||||||||||||| ||||| ||||||||||| |||||| || ||||| || ||||| |||||    
T  8655371 ccaatcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcatt 8655435  T

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Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 8546663 - 8546761
Alignment:
Q  213 tgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    |||||| |||| ||| || ||||| |||||||||||||||| ||||||   ||  | |||||||||| ||||||| || ||| |||||||||| |||||    
T  8546663 tgggttagaagaagcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcatt 8546761  T

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Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 29581301 - 29581235
Alignment:
Q  191 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacct 257  Q
    |||||||| |||||||||| | ||||||||  ||||| || ||||||||||||| || |||||||||    
T  29581301 aattaccaaagatagtgtttgttgggtttgcggcagcctgatttttagcagcattactaatcaacct 29581235  T

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Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 8016385 - 8016308
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatta 312  Q
    |||||||||||||| |||||||||| |  ||||| |||||||||| |||| || || |||| ||| ||||| ||||||    
T  8016385 ttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcatta 8016308  T

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Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 8591195 - 8591232
Alignment:
Q  33 atcactgtatttccttccaattaacctctttgcatctg 70  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  8591195 atcactgaatttccttccaatcaacctctttgcatctg 8591232  T

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Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 29577280 - 29577243
Alignment:
Q  33 atcactgtatttccttccaattaacctctttgcatctg 70  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  29577280 atcactgaatttccttccaattaacctcttcgcatctg 29577243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 8584628 - 8584576
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 287  Q
    ||||||||| |||||| ||||||||||||||| |  ||||||||||| |||||    
T  8584628 ttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaagg 8584576  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 4677632 - 4677544
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctc 323  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||||||||| || ||| |||| ||||||||||| || ||||||||    
T  4677632 ttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctc 4677544  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 15596069 - 15596157
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctc 323  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||  ||||||||||||| ||||| | |||||||||    
T  15596069 ttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctc 15596157  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 34465362 - 34465251
Alignment:
Q  213 tgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatta 312  Q
    |||||| | ||||| ||| || |||||||||| ||| ||||| |||||||||| ||  ||||||||||||||||| |||||| |||| ||||| |||||     
T  34465362 tgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattg 34465263  T
Q  313 tagataatctct 324  Q
    |  |||||||||    
T  34465262 tcaataatctct 34465251  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 12244508 - 12244431
Alignment:
Q  222 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtt 299  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||| || ||||||||    
T  12244508 agcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgtt 12244431  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 16656692 - 16656599
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctc 328  Q
    |||||||||||||| |||||||||||||||| || |||||||||||||||||| || ||||||||||| || ||||| |  || ||||||||||    
T  16656692 ttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgctc 16656599  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 43626330 - 43626419
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctct 324  Q
    |||||||||||||||||||||||||| || | || ||||| |||||||||||| || |||||||||||||| ||||| | ||||||||||    
T  43626330 ttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctct 43626419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 12258019 - 12257936
Alignment:
Q  222 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttg 305  Q
    ||||||||| || ||||||||||||||||||||||||||||| | ||  ||||||||| ||||||| || ||||||||||||||    
T  12258019 agcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttg 12257936  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 12235787 - 12235878
Alignment:
Q  214 gggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttg 305  Q
    ||||| ||||||||||| || ||||||||||||||||||||||| ||||  || | |||||||||||||||||| || ||||| || |||||    
T  12235787 gggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttg 12235878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 14705460 - 14705543
Alignment:
Q  222 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttg 305  Q
    ||||||||| || ||||||||||||||||||||||  ||||  || | ||||||||||||||||||||| ||||| || |||||    
T  14705460 agcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgttctattgccttg 14705543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 12000334 - 12000395
Alignment:
Q  226 gcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 287  Q
    |||||||||||||||||||||||||  ||||||||||  |||| |||||||||| |||||||    
T  12000334 gcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaagg 12000395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 7543266 - 7543357
Alignment:
Q  214 gggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttg 305  Q
    ||||| ||||||||||| || ||||||  |||||| |||||||| ||||  || | |||||||||||||||||| || |||||||| |||||    
T  7543266 gggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgttctgttgccttg 7543357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 16661171 - 16661106
Alignment:
Q  222 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 287  Q
    ||||||||| |  ||||||||| |||| | |||||||||| ||||||  |||||||||||||||||    
T  16661171 agcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaagg 16661106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 28220954 - 28221033
Alignment:
Q  232 tttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    |||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||| ||| |||| ||||| |||||    
T  28220954 tttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcatt 28221033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 42554279 - 42554203
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 311  Q
    ||||||||||||||||||||||||| || || ||  ||||||||||||||||| || ||| |||| ||||| |||||    
T  42554279 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcatt 42554203  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 9323198 - 9323080
Alignment:
Q  193 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 292  Q
    |||||| ||||||||||  | ||||| | ||||| ||| || |||||||||||||||||||||||||| ||||    |||||||||||||||||| || |    
T  9323198 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9323099  T
Q  293 ttctgtttccttgttcatt 311  Q
    ||| ||||||||| |||||    
T  9323098 ttcggtttccttgatcatt 9323080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 9377677 - 9377559
Alignment:
Q  193 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 292  Q
    |||||| ||||||||||  | ||||| | ||||| ||| || |||||||||||||||||||||||||| ||||    |||||||||||||||||| || |    
T  9377677 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9377578  T
Q  293 ttctgtttccttgttcatt 311  Q
    ||| ||||||||| |||||    
T  9377577 ttcggtttccttgatcatt 9377559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 9335169 - 9335052
Alignment:
Q  193 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 292  Q
    |||||| ||||||||||  | ||||| | ||||| ||| || ||||||||||||||| |||||||||| ||||    |||||||||||||||||| || |    
T  9335169 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9335071  T
Q  293 ttctgtttccttgttcatt 311  Q
    ||| ||||||||| |||||    
T  9335070 ttcggtttccttgatcatt 9335052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 30776114 - 30776179
Alignment:
Q  222 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 287  Q
    |||||| ||||  ||||||||| |||| | |||||||||| |||||| ||||||||||||||||||    
T  30776114 agcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaagg 30776179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 35133451 - 35133516
Alignment:
Q  222 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 287  Q
    ||||||||| || |||||||||||||| |||||||||||||| | || |||||||| | |||||||    
T  35133451 agcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaagg 35133516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 266
Target Start/End: Original strand, 28911324 - 28911355
Alignment:
Q  235 ttagcagcatcaccaatcaacctttgatcatc 266  Q
    ||||||||||||||||||||||||||||||||    
T  28911324 ttagcagcatcaccaatcaacctttgatcatc 28911355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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