View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_21 (Length: 312)
Name: NF21293_low_21
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 54115493 - 54115789
Alignment:
| Q |
1 |
caaaagagaacaaaacatgtgaagaaagcgatcaagttcagttctttgagagtttatcacctcatcgggtcaaggatatgtaccttcagagtcctgacat |
100 |
Q |
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| T |
54115493 |
caaaagagaacaaaacatgtgaagaaagcgatcaagttcagttctttgagagtttatcacctcatcgggtcaaggatatgtaccttcagagtcctgacat |
54115592 |
T |
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| Q |
101 |
aggtattaatcttaacttctatgaatactcactaactaggtaattcccttttgtattaaactagtttttgagaacatgtacattgcacatgaagaaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54115593 |
aggtattaatcttaacttctatgaatactcactaactaggtaattcccttttgtattaaactagtttttgagaacatgtacattgcacatgaagaaatct |
54115692 |
T |
|
| Q |
201 |
gtgtaaggaatcaatgttcgatacgattgacaattctctgtgttcagttaggggaagttaataaatgatataattatcttaagtgctcatgtctcat |
297 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54115693 |
gtgtaaggaatccatgttcgatacgattgacaattctctgtgttcagttaggggaagttaataaatgatataattatcttaagtgctcatgtctcat |
54115789 |
T |
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