View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_24 (Length: 291)
Name: NF21293_low_24
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 31583223 - 31583488
Alignment:
| Q |
11 |
caaagggtggccacactcttttggtcgattccctccccagaaaggaaaaccaattggttttatagttccacaattaaacagattctcacaaccctcattt |
110 |
Q |
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| T |
31583223 |
caaagggtggccacactcttttggtcgatcctctccccagaaaggaaaaccaatttgttttatatttccacaattaaacagattctcacaaccttcattt |
31583322 |
T |
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| Q |
111 |
gtgcttaaatataaaggtatctgaatcagtttcaagaggattatgaattgaagaaaatggaggatagggttgatattatacatggaagccattctgagag |
210 |
Q |
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| T |
31583323 |
gtgctcaaacataaaggtatctgaatcagtttcaaaaggattatgaactgaagaaaatggaggatagggttgatattatacatggaagccatgctgagag |
31583422 |
T |
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| Q |
211 |
atcaatgaactaaaaggaactggtttatgtattgaccaaaaggagtgatggagcagaggtttcttt |
276 |
Q |
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| T |
31583423 |
atcaatgaactaaaaggaactggtttatgtattgaccaaaaggagtgatggagcagaggtttcttt |
31583488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 31641829 - 31641994
Alignment:
| Q |
11 |
caaagggtggccacactcttttggtcgattccctccccagaaaggaaaaccaattggttttatagttccacaattaaacagattctcacaaccctcattt |
110 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
31641829 |
caaagggtggccacactcttttggtcgatcctctccccagaaaggaaaaccaatttgttttatatttccacaattaaacagattctcacaaccttcattt |
31641928 |
T |
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| Q |
111 |
gtgcttaaatataaaggtatctgaatcagtttcaagaggattatgaattgaagaaaatggaggata |
176 |
Q |
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| T |
31641929 |
gtgctcaaacataaaggtatctgaatcagtttcaaaaggattatgaactgaagaaaatggaggata |
31641994 |
T |
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