View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_26 (Length: 261)
Name: NF21293_low_26
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_26 |
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| [»] chr8 (5 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 38120664 - 38120927
Alignment:
| Q |
1 |
caaactaaaaagaactaagcaaccgtgtgaattagctacattagatggacaacagcgtaaacttattaactacaaatttcatagagattcacttcagcag |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120664 |
caaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaacttattaactacaaatttcatagagattcacttcagcag |
38120763 |
T |
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| Q |
101 |
agaaagaactgaaccacaatcttcat---catcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
197 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120764 |
agaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
38120863 |
T |
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| Q |
198 |
ggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaagagcagagc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38120864 |
ggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaggagcagagc |
38120927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 57 - 261
Target Start/End: Complemental strand, 38609400 - 38609196
Alignment:
| Q |
57 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccat |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38609400 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat |
38609301 |
T |
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| Q |
157 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaagagc |
256 |
Q |
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| T |
38609300 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagc |
38609201 |
T |
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| Q |
257 |
agagc |
261 |
Q |
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||||| |
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| T |
38609200 |
agagc |
38609196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 57 - 261
Target Start/End: Complemental strand, 38794183 - 38793979
Alignment:
| Q |
57 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccat |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38794183 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat |
38794084 |
T |
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| Q |
157 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaagagc |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38794083 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagc |
38793984 |
T |
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| Q |
257 |
agagc |
261 |
Q |
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||||| |
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| T |
38793983 |
agagc |
38793979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 34592957 - 34592844
Alignment:
| Q |
101 |
agaaagaactgaaccacaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
197 |
Q |
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|||||||| | |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
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| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
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| Q |
198 |
ggagacacacctgc |
211 |
Q |
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| T |
34592857 |
ggagacacacctgc |
34592844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 38287498 - 38287457
Alignment:
| Q |
67 |
taactacaaatttcatagagattcacttcagcagagaaagaa |
108 |
Q |
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||||||||| |||||||||| |||||||||||||| |||||| |
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| T |
38287498 |
taactacaagtttcatagagtttcacttcagcagaaaaagaa |
38287457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 28730241 - 28730501
Alignment:
| Q |
1 |
caaactaaaaagaactaagcaaccgtgtgaattagctacattagatggacaacagcgtaaacttattaactacaaatttcatagagattcacttcagcag |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || || |||||||||| |
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| T |
28730241 |
caaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgtaaacttattaactacaaatttcatatagttttacttcagcag |
28730340 |
T |
|
| Q |
101 |
agaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
200 |
Q |
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|||||||| | || | |||||||| |||| ||| || |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
28730341 |
agaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcatggga |
28730440 |
T |
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| Q |
201 |
gacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaagagcagagc |
261 |
Q |
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|||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
28730441 |
gacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagagcagagc |
28730501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
98 |
cagagaaagaactgaaccacaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
169 |
Q |
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||||||||||| | |||| | ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 33078588 - 33078556
Alignment:
| Q |
49 |
acaacagcgtaaacttattaactacaaatttca |
81 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
33078588 |
acaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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