View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_27 (Length: 255)
Name: NF21293_low_27
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_27 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48025192 - 48024953
Alignment:
| Q |
1 |
caggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48025192 |
caggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaaccagtttcatctacttccaatttcaaacctttccattcataaacattcct |
48025093 |
T |
|
| Q |
101 |
cacattcctaaaatcccctaaacccacaaacccatttttaccaaccacgccaaattcctccttcactctccccataatcctcgaatccacaaaacccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48025092 |
cacattcctaaaatcccctaaacccacaaacccatttttaccaaccaccccaaattcctccttcactctccccataatcctggaatccacaaaacccaac |
48024993 |
T |
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| Q |
201 |
aacttccccggttcatcaacgcaatctcgaccaatcttcg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
48024992 |
aacttccccggttcatcaacgcaatctcgaccaatcttcg |
48024953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48020403 - 48020167
Alignment:
| Q |
1 |
caggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcct |
100 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
48020403 |
caggatcagaactttcacattcaatctcaaacaaagttccaaaatcaaaatgagtctcatccacttccaatttcaaacctttccaatcataaacattcct |
48020304 |
T |
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| Q |
101 |
cacattcctaaaatcccctaaacccacaaacccatttttaccaaccacgccaaattcctccttcactctccccataatcctcgaatccacaaaacccaac |
200 |
Q |
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||||||| ||||| | || ||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| || || | |
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| T |
48020303 |
cacattcttaaaacctcccaaacccacaaacccattttcacccaccaccccaaattcctccttcaccctccccataatcctcgactccaccaaccc---c |
48020207 |
T |
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| Q |
201 |
aacttccccggttcatcaacgcaatctcgaccaatcttcg |
240 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||| |
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| T |
48020206 |
aatttccccggttcatcaacacaatctcgaccaatcttcg |
48020167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 51934793 - 51934557
Alignment:
| Q |
1 |
caggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51934793 |
caggatcagaactctcacactcaatctcaaacaaagtctcaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcat |
51934694 |
T |
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| Q |
101 |
cacattcctaaaatcccctaaacccacaaacccatttttaccaaccacgccaaattcctccttcactctccccataatcctcgaatccacaaaacccaac |
200 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51934693 |
cacattcctaaaatcctctaatcccacaaacccatttttacccaccaccccaaattcctccttcactctccccataatcctcgaatccacaaaacc---c |
51934597 |
T |
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| Q |
201 |
aacttccccggttcatcaacgcaatctcgaccaatcttcg |
240 |
Q |
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|||||||| |||||||||||| |||||||||||||||||| |
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| T |
51934596 |
aacttccctggttcatcaacggaatctcgaccaatcttcg |
51934557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13963 - 13727
Alignment:
| Q |
1 |
caggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcct |
100 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13963 |
caggatcagagctttcacactcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcct |
13864 |
T |
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| Q |
101 |
cacattcctaaaatcccctaaacccacaaacccatttttaccaaccacgccaaattcctccttcactctccccataatcctcgaatccacaaaacccaac |
200 |
Q |
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|||||||||||| | |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13863 |
cacattcctaaacttccctaatcccacaaacccatttttacccaccaccccaaattcctccttcactctccccataatcctcgaatccacaaaacc---c |
13767 |
T |
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| Q |
201 |
aacttccccggttcatcaacgcaatctcgaccaatcttcg |
240 |
Q |
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||||||||| ||||||||||| |||||||||||||||||| |
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| T |
13766 |
aacttccccagttcatcaacggaatctcgaccaatcttcg |
13727 |
T |
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