View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_3 (Length: 581)
Name: NF21293_low_3
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 9 - 568
Target Start/End: Original strand, 29671618 - 29672177
Alignment:
| Q |
9 |
caaattgtgtctttcttcccaatttgttcttgttcaccattccagcttccaaattcacttgttcagattctttgattataggtcttctagttgatttccc |
108 |
Q |
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| T |
29671618 |
caaattgtgtctttcttcccaatttgttcttgttcaccattccagcttccaaattcacttgttcagattctttgattataggtcttctagttgatttccc |
29671717 |
T |
|
| Q |
109 |
tgtcttcaaattcaaccgaatttcagacaaaacactctccaaattctcttcacattcattgaatatcgaatcagccggtgtcatacacgatccaatcacc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29671718 |
tgtcttcaaattcaaccgaatttcagacaaaacactctccaaattctcttcacattcattgaatatcgaatcagccggtgtcatacatgatccaatcacc |
29671817 |
T |
|
| Q |
209 |
acaacttcatcattttcaggctcttcccacgcattccacagatgaaaacagaaacactctggtgcatcaatccaaatcatctcagaagaatcttcagcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671818 |
acaacttcatcattttcaggctcttcccacgcattccacagatgaaaacagaaacactctggtgcatcaatccaaatcatctcagaagaatcttcagcat |
29671917 |
T |
|
| Q |
309 |
tctttgataaaaccccgaacctcgagactttctccttatcgtaaacaacaggcgacccaccacggatcatttcacccaatttaaacacaacttgttgatc |
408 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671918 |
tcttggataaaaccccgaacctcgagactttctccttatcgtaaacaacaggcgacccaccacggatcatttcacccaatttaaacacaacttgttgatc |
29672017 |
T |
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| Q |
409 |
aggcacaacaacgaaattctcagtgatcgcgaagtcatgcatcatagtaggctgctccaacggaatctcaacgtccggagacttaactccggacgcatca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672018 |
aggcacaacaacgaaattctcagtgatcgcgaagtcatgcatcatagtaggctgctccaacggaatctcaacgtccggagacttaactccggacgcatca |
29672117 |
T |
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| Q |
509 |
aaacgaaagtatttcaaataaggcttttgaactacgtcatagctcaaagcatacatattc |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672118 |
aaacgaaagtatttcaaataaggcttttgaactacgtcatagctcaaagcatacatattc |
29672177 |
T |
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