View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_30 (Length: 252)
Name: NF21293_low_30
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_30 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 45273752 - 45273516
Alignment:
| Q |
16 |
aaaatcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattag |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
45273752 |
aaaatcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattag |
45273653 |
T |
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| Q |
116 |
cagggccgaggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
215 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273652 |
cagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
45273553 |
T |
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| Q |
216 |
ggcttcaaagcttgaaaattaaactaatgtttctatt |
252 |
Q |
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| T |
45273552 |
ggcttcaaagcttgaaaattaaactaatgtttctatt |
45273516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 45281996 - 45281773
Alignment:
| Q |
16 |
aaaatcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattag |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
45281996 |
aaaatcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattag |
45281897 |
T |
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| Q |
116 |
cagggccgaggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
215 |
Q |
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| T |
45281896 |
cagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
45281797 |
T |
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| Q |
216 |
ggcttcaaagcttgaaaattaaac |
239 |
Q |
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| T |
45281796 |
ggcttcaaagcttgaaaattaaac |
45281773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 45293328 - 45293113
Alignment:
| Q |
24 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
123 |
Q |
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| T |
45293328 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45293229 |
T |
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| Q |
124 |
aggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaa |
223 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||||||||||| |
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| T |
45293228 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaa |
45293129 |
T |
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| Q |
224 |
agcttgaaaattaaac |
239 |
Q |
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| T |
45293128 |
agcttgaaaattaaac |
45293113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 45302288 - 45302073
Alignment:
| Q |
24 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
123 |
Q |
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| T |
45302288 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45302189 |
T |
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| Q |
124 |
aggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaa |
223 |
Q |
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| T |
45302188 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaa |
45302089 |
T |
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| Q |
224 |
agcttgaaaattaaac |
239 |
Q |
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|||||||||||||||| |
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| T |
45302088 |
agcttgaaaattaaac |
45302073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 45270194 - 45269954
Alignment:
| Q |
24 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
123 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||| || |
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| T |
45270194 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
45270095 |
T |
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| Q |
124 |
aggctaccaaattcaccgctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta |
211 |
Q |
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|||||||||||| |||||| ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||| |
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| T |
45270094 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
45269995 |
T |
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| Q |
212 |
ccttggcttcaaagcttgaaaattaaactaatgtttctatt |
252 |
Q |
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| T |
45269994 |
ccttggcttcaaagcttgaaaattaaactaatgtttctatt |
45269954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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