View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_31 (Length: 250)
Name: NF21293_low_31
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2112689 - 2112447
Alignment:
| Q |
1 |
attcacattacaaaggcatataagccggaattgattaacaaataattcaaataattaatcaaataatttacatttctcacatattaaagaataatgagtg |
100 |
Q |
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| T |
2112689 |
attcacattacaaaggcatagaagccgaaattgattaacaaataattcaaataattaatcacataatttacatttctcacatattaaaaaataatgagcg |
2112590 |
T |
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| Q |
101 |
attttataaaaaagaatagtaaaggatatgaaagg-nnnnnnnncattaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttt |
199 |
Q |
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| T |
2112589 |
attttataaaaaagaatagtaaaggatatgaaaggaaaaaaaaacattaatgttgtattgtttttataaattaacatataataaaacacaaatatatttt |
2112490 |
T |
|
| Q |
200 |
tcaaagtgacatactgtataataaaatacagagggagtattat |
242 |
Q |
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| T |
2112489 |
tcaaagtgacatactgtataataaaatacagagagagtattat |
2112447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 3354695 - 3354649
Alignment:
| Q |
166 |
taaattaacatataataaaacacaaatatatttttcaaagtgacata |
212 |
Q |
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| T |
3354695 |
taaagtaacatatattaaaacacaaatatatttttcaaagtgacata |
3354649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 14950990 - 14950921
Alignment:
| Q |
163 |
ttgtaaattaacatataataaaacacaaatatatttttcaaagtgacatactgtataataaaatacagagggagta |
238 |
Q |
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| T |
14950990 |
ttgtaaagtgacatattataaaacataaata-atttttcaaagtga-----tgtataataaaatacagagggagta |
14950921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 6239282 - 6239219
Alignment:
| Q |
145 |
attaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttttcaaagtgac |
209 |
Q |
| |
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| T |
6239282 |
attaatgaggcattgatattgtaaagtgacttataataaaacacaaatat-tttttcaaagtgac |
6239219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 30980414 - 30980468
Alignment:
| Q |
145 |
attaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttt |
199 |
Q |
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|
| T |
30980414 |
attaatgatgtatttgtattgtaaagtaacatataatgaaacacaaatatttttt |
30980468 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 25149523 - 25149571
Alignment:
| Q |
163 |
ttgtaaattaacatataataaaacacaaatatatttttcaaagtgacat |
211 |
Q |
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||||||| | ||||||||| |||||||||||| |||| ||||||||||| |
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|
| T |
25149523 |
ttgtaaagtgacatataatcaaacacaaatattttttccaaagtgacat |
25149571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 52157147 - 52157206
Alignment:
| Q |
144 |
cattaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttttcaaa |
204 |
Q |
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||||||||||| |||| | |||| || | |||||||||||||||||||||| ||||||||| |
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| T |
52157147 |
cattaatgatgcattgatattgtgaagtgacatataataaaacacaaatat-tttttcaaa |
52157206 |
T |
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