View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_38 (Length: 233)
Name: NF21293_low_38
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_38 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 48025245 - 48025462
Alignment:
| Q |
1 |
ttcatactctgttgcttctaaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctattgttttttgagttgagttgaattagttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48025245 |
ttcatactctgttgcttctaaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctatcgttttttgagttgagttgaattagttta |
48025344 |
T |
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| Q |
101 |
taagttatgcttttgttgttgataat-atatgagtgtaagattttctgtttgttgtgtgttgcaagttactgttaatctcatgttccttcctacttattt |
199 |
Q |
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| T |
48025345 |
taagttatgcttttgttgttgataataatatgagtgtaagattttctgtttgt--tgtgttgcaagttactgttaatctcatgttccttcctacttattt |
48025442 |
T |
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| Q |
200 |
tgtttacacatgtttgatat |
219 |
Q |
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|||||||||||||||||||| |
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| T |
48025443 |
tgtttacacatgtttgatat |
48025462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 48020456 - 48020615
Alignment:
| Q |
1 |
ttcatactctgttgcttctaaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctattgtttt----ttgagttgagttgaattag |
96 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||| |||| ||| |
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| T |
48020456 |
ttcatactctgttgcttctaaatttgcaatttttcgagctgggaaattgccatagtgagtggattttctattgtttttcaattgagttgaaatgaactag |
48020555 |
T |
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| Q |
97 |
tttataagttat-gcttttgttgttgataatatatgagtgtaagattttctgtttgttgt |
155 |
Q |
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| T |
48020556 |
tttataagttatggtttttgtagttgataatttaagaatgtaacatttcatgtttgttgt |
48020615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 14016 - 14210
Alignment:
| Q |
1 |
ttcatactctgttgcttctaaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctattgttttttgagttgagttgaattagttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14016 |
ttcatactctgttgcttctaaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctatcattttttgagttgagttgaattagttta |
14115 |
T |
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| Q |
101 |
taagttatgcttttgttgttgataatatatgagtgtaagattttctgtttgttgtg--------tgttgcaagttactgttaatctcatgttcct |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
14116 |
taagttatgcttttgttgttgataatatatgagtgtaagattttctgtttgttgtgttgccatattgtgcaagttactgttaatctcatgttcct |
14210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 51934846 - 51935040
Alignment:
| Q |
1 |
ttcatactctgttgcttctaaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctattgttttttgagttgagttgaattagttta |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51934846 |
ttcatactcttttgcttctaaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctatcgttttttgagttgagttgaattagttta |
51934945 |
T |
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| Q |
101 |
taagttatgcttttgttgttgataatatatgagtgtaagattttctgtttgttgtg--------tgttgcaagttactgttaatctcatgttcct |
187 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
51934946 |
taagttatgtttttgttgttgataatatatgagtgtaagattttatgtttgttgtgttgccatattgtgcaagttactgttaatctcatgttcct |
51935040 |
T |
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