View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_41 (Length: 221)
Name: NF21293_low_41
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 4918774 - 4918591
Alignment:
| Q |
14 |
tagcaaaggccgaaaacaagctaccagaacagaaatacacagacacagcacacataatttcaatcctcaagcagccgagaaccagatacattaacatttt |
113 |
Q |
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| T |
4918774 |
tagcaaaggccgaaaacaagctaccagaacagaaatacacagacacagcgcatataattccaatcctcaagcagccgagaaccagatacattaacatttt |
4918675 |
T |
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| Q |
114 |
gacctaaatatctcttatgatatcgctctaagtcactaacgagataccggtcaacttaagaaaatgtaaaccatgtcatctaat |
197 |
Q |
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| T |
4918674 |
gacctaaatatctcttatgatatcgctctaagtcactgacgagctaccggtcaactttagaaaatgtaaaacatatcatctaat |
4918591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 4918553 - 4918515
Alignment:
| Q |
99 |
atacattaacattttgacctaaatatctcttatgatatc |
137 |
Q |
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| T |
4918553 |
atacattaacattttgacctacatatctcttataatatc |
4918515 |
T |
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