View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_7 (Length: 461)
Name: NF21293_low_7
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 34899414 - 34899696
Alignment:
| Q |
1 |
ccaccactttcaatgtagacctcagcaccaacagaatttgaattagcaaaaaagtcatcatcatccgtgtcagactcctcataaaaagaagaagactcga |
100 |
Q |
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| T |
34899414 |
ccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcgaaaaagtcatcatcatccgtgtcagactcctcataaaaagaagaagactcga |
34899513 |
T |
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| Q |
101 |
cgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttggctatacgaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899514 |
cgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttggctatacgaatg |
34899613 |
T |
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| Q |
201 |
tgttttgcgacgaggtggaacagaactcaacccggccaaagactccttctcatcgtcgtcaatatttcgatcatccatgatag |
283 |
Q |
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| T |
34899614 |
tgttttgcgacgaggtggaacagaactcaacccggccaaagactccttctcatcgtcgtcaatatttcgatcatccatgatag |
34899696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 34899812 - 34899856
Alignment:
| Q |
401 |
gtctaaaggggttccctagagaggtggaagtacgtaggattgatg |
445 |
Q |
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| T |
34899812 |
gtctaaaggggttccctagagaggtggaagtacgtaggattgatg |
34899856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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