View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21293_low_9 (Length: 438)
Name: NF21293_low_9
Description: NF21293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21293_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 34 - 366
Target Start/End: Complemental strand, 8160369 - 8160037
Alignment:
| Q |
34 |
gaacactcttttaggcagaattcgacaattgattcgcaatattgtgtgacactgttccttttctgtagactcgattattattgataaggtagttgcgttt |
133 |
Q |
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| T |
8160369 |
gaacacttttttaggcaaaattcggctattgaatcacaatattgtgtgatactattccttttctgtagactcgattattattgataaggtagttgtgttt |
8160270 |
T |
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| Q |
134 |
tttcctcttaaatgagtttatccaattagttacgtatatgatctgtataatttgacttttcaatactcacgttcttggacacaaatttgcaagagttaaa |
233 |
Q |
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| T |
8160269 |
tttcctcttaaatgagtttatccaattagttacgtatatgatctgtataatttgactttttaatactcacgttcttggacacaaatttgtaagagttgaa |
8160170 |
T |
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| Q |
234 |
ttaccgttgtaagcttcctattttttgtaggggccaaaattaatggtcaatttattggagaaaggttaaattattagtagtacgaattgtacacactgaa |
333 |
Q |
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| T |
8160169 |
ttactgttgtaagctacctattttttgtaggggccaaaattaatggtcaatttattggagaaaggttaaattattagtagtacgaattgtacacactgaa |
8160070 |
T |
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| Q |
334 |
cctccttttaacattcatttgaccaacattctt |
366 |
Q |
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| T |
8160069 |
cctccttttaacattcgtttgatgaacattctt |
8160037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 8159637 - 8159585
Alignment:
| Q |
371 |
aaaaacaaaaccttcatttgaccaacatctcaatttatattactaggctacat |
423 |
Q |
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| T |
8159637 |
aaaaacaaaaccttcatttgaccaacatctcaatttatattactgggctacat |
8159585 |
T |
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