View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21294_high_12 (Length: 368)

Name: NF21294_high_12
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21294_high_12
NF21294_high_12
[»] chr8 (20 HSPs)
chr8 (16-368)||(10405048-10405395)
chr8 (295-368)||(11708980-11709054)
chr8 (295-368)||(13286125-13286198)
chr8 (317-368)||(8544615-8544666)
chr8 (317-368)||(23852905-23852956)
chr8 (317-368)||(33445564-33445615)
chr8 (317-368)||(39821878-39821929)
chr8 (295-364)||(8461829-8461899)
chr8 (295-368)||(20665356-20665429)
chr8 (295-368)||(24023408-24023482)
chr8 (295-368)||(27587215-27587289)
chr8 (295-364)||(29716693-29716763)
chr8 (295-368)||(30550719-30550792)
chr8 (295-368)||(44215468-44215541)
chr8 (318-367)||(5728533-5728582)
chr8 (295-367)||(17704008-17704081)
chr8 (295-368)||(44084265-44084338)
chr8 (295-362)||(32051525-32051593)
chr8 (312-368)||(33105385-33105441)
chr8 (304-356)||(40919362-40919414)
[»] chr5 (16 HSPs)
chr5 (295-367)||(16701574-16701647)
chr5 (295-368)||(6489001-6489075)
chr5 (295-368)||(34191427-34191501)
chr5 (295-368)||(34436845-34436919)
chr5 (295-368)||(11720888-11720961)
chr5 (319-368)||(27721693-27721742)
chr5 (317-368)||(15889405-15889456)
chr5 (295-368)||(22522794-22522868)
chr5 (295-368)||(37462106-37462179)
chr5 (295-368)||(42473888-42473962)
chr5 (319-368)||(5485180-5485229)
chr5 (295-367)||(33412086-33412159)
chr5 (301-368)||(5015275-5015342)
chr5 (312-368)||(18589878-18589934)
chr5 (317-365)||(31591553-31591601)
chr5 (312-368)||(37932324-37932380)
[»] chr2 (15 HSPs)
chr2 (295-368)||(10735824-10735898)
chr2 (295-368)||(3197073-3197146)
chr2 (295-368)||(44526122-44526196)
chr2 (295-368)||(3708688-3708761)
chr2 (295-368)||(11868655-11868728)
chr2 (295-368)||(24592839-24592913)
chr2 (295-368)||(29544621-29544695)
chr2 (295-368)||(34977198-34977272)
chr2 (295-368)||(35360048-35360121)
chr2 (295-368)||(35820294-35820368)
chr2 (319-368)||(7201501-7201550)
chr2 (296-368)||(7206119-7206192)
chr2 (312-365)||(20565086-20565139)
chr2 (295-335)||(9581280-9581320)
chr2 (312-368)||(17328017-17328073)
[»] chr3 (13 HSPs)
chr3 (296-364)||(43777051-43777119)
chr3 (295-368)||(18870718-18870792)
chr3 (317-368)||(33223862-33223913)
chr3 (295-368)||(916434-916507)
chr3 (295-368)||(9598433-9598507)
chr3 (295-368)||(29631180-29631254)
chr3 (319-368)||(1757687-1757736)
chr3 (317-362)||(6901470-6901515)
chr3 (319-368)||(7868716-7868765)
chr3 (295-367)||(25340917-25340990)
chr3 (300-356)||(35548287-35548343)
chr3 (295-327)||(38024329-38024361)
chr3 (317-365)||(43490433-43490481)
[»] chr1 (9 HSPs)
chr1 (317-368)||(37098497-37098548)
chr1 (295-368)||(42045365-42045439)
chr1 (317-368)||(21400039-21400090)
chr1 (317-368)||(37045162-37045213)
chr1 (317-368)||(48681949-48682000)
chr1 (295-368)||(17139510-17139584)
chr1 (295-368)||(41763148-41763222)
chr1 (297-365)||(16533028-16533097)
chr1 (301-368)||(44243867-44243935)
[»] scaffold0040 (1 HSPs)
scaffold0040 (295-368)||(56778-56851)
[»] chr7 (14 HSPs)
chr7 (303-367)||(3953436-3953500)
chr7 (295-367)||(10326949-10327021)
chr7 (301-368)||(46207754-46207821)
chr7 (295-364)||(3671822-3671892)
chr7 (295-368)||(19416508-19416582)
chr7 (295-368)||(20763149-20763222)
chr7 (295-368)||(27462429-27462503)
chr7 (295-368)||(29488715-29488788)
chr7 (295-368)||(33232390-33232463)
chr7 (295-368)||(34284532-34284605)
chr7 (300-365)||(18505656-18505721)
chr7 (312-364)||(7670432-7670484)
chr7 (312-368)||(10244721-10244777)
chr7 (296-368)||(21993176-21993248)
[»] chr4 (14 HSPs)
chr4 (312-368)||(20799405-20799461)
chr4 (317-368)||(50362155-50362206)
chr4 (295-368)||(7230274-7230348)
chr4 (295-368)||(10261762-10261835)
chr4 (295-368)||(21562620-21562693)
chr4 (295-368)||(26926703-26926776)
chr4 (295-368)||(35287500-35287574)
chr4 (295-368)||(43330141-43330214)
chr4 (295-368)||(51450207-51450280)
chr4 (296-368)||(14577501-14577574)
chr4 (295-331)||(3648897-3648933)
chr4 (295-362)||(3936627-3936695)
chr4 (312-368)||(23304027-23304083)
chr4 (295-331)||(56204978-56205014)
[»] chr6 (7 HSPs)
chr6 (295-368)||(247654-247727)
chr6 (316-365)||(10780122-10780171)
chr6 (300-368)||(13496110-13496179)
chr6 (295-368)||(21296752-21296825)
chr6 (316-368)||(1514176-1514228)
chr6 (312-368)||(9111041-9111097)
chr6 (317-365)||(33938695-33938743)
[»] scaffold0005 (1 HSPs)
scaffold0005 (296-368)||(239801-239874)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 10405395 - 10405048
Alignment:
Q  16 atagagcaattgatcacacctatgtataatagctagtagcatgctgacaagtttatatatcttcaaaagatttatcaatcttggaacttggctgtataat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10405395 atagagcaattgatcacacctatgtataatagctagtagcatgctgacaagtttatatatcttcaaaagatttatcaatcttggaacttggctgtataat 10405296  T
Q  116 ccagatcgaggagctcgaaggtggaatgcaccaattttcagatacattccttctcgaaaattgacggtgatcgtgcttcttctttattcaac-------- 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  10405295 ccagatcgaggagctcgaaggtggaatgcaccaattttcagatacattccttctcgaaaattgacggtgatcgtgcttcttctttattcaacacttccaa 10405196  T
Q  208 -tagagaactcacactcctataaagatttccactatctactgcaatataagccaatttcgtagatatcacacaagttannnnnnnnncgtggccggggtt 306  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||          |||||||| ||||    
T  10405195 atagagaattcacactcctataaagatttccactatctactgcaatataagccaatttcgtagatatc-------tt-------tttcgtggccgaggtt 10405110  T
Q  307 tgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||| | ||||||||||||| |||||||| |||||| || |||||||| ||||||||||    
T  10405109 tgaatccagaccttgcatatatttttcatggtccccaccaaccgagctaagttcacgaggac 10405048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 11709054 - 11708980
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||| | ||| ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  11709054 gtggtcggggtttgaacttcggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 11708980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 13286198 - 13286125
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||  |||||||||||||| ||| ||    ||| ||||||||||||||||||||||    
T  13286198 gtggccggggtttgaacccggatcttgcatatattatgcattgtctataccaactgagctaagctcacgaggac 13286125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 8544615 - 8544666
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||| |||| |||  |||| ||||||||||||||||||||||||||    
T  8544615 ccttgcatattttatacattattccaaccgactgagctaagctcacgaggac 8544666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 23852956 - 23852905
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||| || |  ||||||||||||||||||||||||||    
T  23852956 ccttgcatatattatgcattgtccataccgactgagctaagctcacgaggac 23852905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 33445615 - 33445564
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||| ||||||||| ||| ||||| ||| ||||||||||||||||||||||    
T  33445615 ccttgtatatattatgcattgttcctaccaactgagctaagctcacgaggac 33445564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 39821929 - 39821878
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  39821929 ccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 39821878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 8461829 - 8461899
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacga 364  Q
    |||| ||||||||||| ||||| |||||||||| |||| ||| || || ||| ||||||||||||||||||    
T  8461829 gtggtcggggtttgaactccggaccttgcatattttatgcattgtcccaaccaactgagctaagctcacga 8461899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 20665356 - 20665429
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  20665356 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 20665429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 24023408 - 24023482
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||| || || |||||||||| |||| ||| ||||| ||  ||||||||||||||||||||||    
T  24023408 gtggtcggggtttgaaccccggaccttgcatattttatgcattgttccaactaactgagctaagctcacgaggac 24023482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 27587289 - 27587215
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || || |||||||||||| || ||| || |  ||| ||||||||||||||||||||||    
T  27587289 gtggccggggtttgaaccccggaccttgcatatatcatgcattgtccttaccaactgagctaagctcacgaggac 27587215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 29716693 - 29716763
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacga 364  Q
    |||||||| |||||||||| || |||||||||||||||  || ||||| ||| |||||| |||||||||||    
T  29716693 gtggccggagtttgaatcccggaccttgcatatattatgaattgttcctaccaactgagttaagctcacga 29716763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 30550719 - 30550792
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  30550719 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 30550792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 44215468 - 44215541
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  44215468 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 44215541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 5728582 - 5728533
Alignment:
Q  318 cttgcatatattattcatggttcccaccgactgagctaagctcacgagga 367  Q
    |||||||||||||| ||| |||| || | |||||||||||||||||||||    
T  5728582 cttgcatatattatgcattgttctcatcaactgagctaagctcacgagga 5728533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 17704081 - 17704008
Alignment:
Q  295 gtggccggggtttgaatc-cggtccttgcatatattattcatggttcccaccgactgagctaagctcacgagga 367  Q
    ||||||| |||||||||| | | ||||||||||||||| ||| || |  ||| |||||||||||||||||||||    
T  17704081 gtggccgaggtttgaatcacagaccttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 17704008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 44084265 - 44084338
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||| |||||||| |||| ||||||||||||||| ||| ||||  | | |||||||| | |||||||||||    
T  44084265 gtggccgaggtttgaacccggaccttgcatatattatgcattgttctaatcaactgagcttaactcacgaggac 44084338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 32051525 - 32051593
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcac 362  Q
    |||||||||||||||| || || ||||||||||||||| ||| || |  ||| ||||||||||||||||    
T  32051525 gtggccggggtttgaaccccggaccttgcatatattatgcattgtccaaaccaactgagctaagctcac 32051593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 33105441 - 33105385
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||||||| ||| ||||  |||  |||||||||||||||||||||    
T  33105441 ccggaccttgcatatattatgcattgttcaaaccagctgagctaagctcacgaggac 33105385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 40919362 - 40919414
Alignment:
Q  304 gtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaa 356  Q
    ||||||| |||| ||||||||||||||| ||| ||||| ||| ||||||||||    
T  40919362 gtttgaacccggaccttgcatatattatgcattgttcctaccaactgagctaa 40919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 16701574 - 16701647
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgagga 367  Q
    |||| |||||||||||||| || ||||||||||||||||||| || || ||| |||||||||||||||||||||    
T  16701574 gtggtcggggtttgaatcccggaccttgcatatattattcattgtccctaccaactgagctaagctcacgagga 16701647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 6489075 - 6489001
Alignment:
Q  295 gtggccggggtttgaatccg-gtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||  | ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  6489075 gtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 6489001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 34191501 - 34191427
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || || |||||||||| |||| ||| || || ||| ||||||||||||||||||||||    
T  34191501 gtggccggggtttgaaccccggaccttgcatattttatgcattgtcccaaccaactgagctaagctcacgaggac 34191427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 34436919 - 34436845
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||| || || ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  34436919 gtgggcggggtttgaaccccggcccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 34436845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 11720961 - 11720888
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || | ||||||||||||||| ||| || || ||| |||||| ||||||||| |||||    
T  11720961 gtggccggggtttgaaccccgaccttgcatatattatgcattgtccctaccaactgagttaagctcacaaggac 11720888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 27721693 - 27721742
Alignment:
Q  319 ttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||| ||| ||||| ||| ||||||||||||||||||||||    
T  27721693 ttgcatatattatgcattgttcctaccaactgagctaagctcacgaggac 27721742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 15889456 - 15889405
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  15889456 ccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 15889405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 22522794 - 22522868
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || || ||||||||||||||| ||| || |  ||| || |||||||||||||||||||    
T  22522794 gtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaaccgagctaagctcacgaggac 22522868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 37462179 - 37462106
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  37462179 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 37462106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 42473962 - 42473888
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||| |||||||| || || ||||||||||||||| ||| ||||| | | | ||||||||||||||||||||    
T  42473962 gtggccgtggtttgaaccccggaccttgcatatattatgcattgttccaatcaattgagctaagctcacgaggac 42473888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 5485229 - 5485180
Alignment:
Q  319 ttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  5485229 ttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 5485180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 33412159 - 33412086
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgagga 367  Q
    ||||||||||||||||||| || ||||||||||||||| |||  |||| ||| |||||  ||| ||||||||||    
T  33412159 gtggccggggtttgaatcctggaccttgcatatattatgcatctttcctaccaactgacataaactcacgagga 33412086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 5015342 - 5015275
Alignment:
Q  301 ggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||| ||||  ||||||||||||||||||| | ||| ||| |||||||||| |||||||||||    
T  5015342 ggggtttgaactccgaaccttgcatatattattcattg-tcctaccaactgagctaaactcacgaggac 5015275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 18589878 - 18589934
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||||||| ||| ||||  ||| |||||| |||||||||||||||    
T  18589878 ccggaccttgcatatattatgcattgttcataccaactgagttaagctcacgaggac 18589934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 31591553 - 31591601
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgag 365  Q
    ||||||||||| ||| ||| ||||| ||| |||||||||||||||||||    
T  31591553 ccttgcatataatatgcattgttcctaccaactgagctaagctcacgag 31591601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 37932380 - 37932324
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||||||| ||| || |  ||| ||||||||||||||||||||||    
T  37932380 ccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggac 37932324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 10735824 - 10735898
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || || ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  10735824 gtggccggggtttgaaccccggaccttgcatatattatgcatcgtccctaccaactgagctaagctcacgaggac 10735898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 3197073 - 3197146
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| |||||||||||||||  ||||||||||||||| ||| || || ||| |||||||||| |||||||||||    
T  3197073 gtggtcggggtttgaatccgaaccttgcatatattatgcattgtccctaccaactgagctaaactcacgaggac 3197146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 44526196 - 44526122
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||||||| || |||||| |||||||| ||| || |  ||| ||||||||||||||||||||||    
T  44526196 gtggccggggtttgaatcccggaccttgcgtatattatgcattgtccataccaactgagctaagctcacgaggac 44526122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 3708761 - 3708688
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  3708761 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 3708688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 11868655 - 11868728
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  11868655 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 11868728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 24592839 - 24592913
Alignment:
Q  295 gtggccggggtttgaatccg-gtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||  | ||||||||||||||| ||| || || ||| ||||||||||| ||||||||||    
T  24592839 gtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagttcacgaggac 24592913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 29544695 - 29544621
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || || ||||||||||||||| ||| || || ||| | |||||||||||||| |||||    
T  29544695 gtggccggggtttgaaccccggaccttgcatatattatgcattgtccctaccaattgagctaagctcactaggac 29544621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 34977272 - 34977198
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||| || ||||| ||||||||||||||| ||| || |  ||| |||||| |||||||||||||||    
T  34977272 gtggccggggtttaaactccggaccttgcatatattatgcattgtccataccaactgagttaagctcacgaggac 34977198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 35360048 - 35360121
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  35360048 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 35360121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 35820294 - 35820368
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||| |||||||| || || |||||||| |||||| ||| || || ||| ||||||||||||||||||||||    
T  35820294 gtggccgaggtttgaaccccggaccttgcatgtattatgcattgtccctaccaactgagctaagctcacgaggac 35820368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 7201550 - 7201501
Alignment:
Q  319 ttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||| ||| ||||  ||| ||||||||||||||||||||||    
T  7201550 ttgcatatattatgcattgttcaaaccaactgagctaagctcacgaggac 7201501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 7206192 - 7206119
Alignment:
Q  296 tggccggggtttgaatc-cggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||| || | ||| ||||||||||||||| ||| ||  | ||| ||||||||||||||||||||||    
T  7206192 tggccggggtttaaacctcggaccttgcatatattatgcattgtctctaccaactgagctaagctcacgaggac 7206119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 20565086 - 20565139
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgag 365  Q
    |||| ||||||||||||||| ||| || || ||| |||||||||||||||||||    
T  20565086 ccggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 20565139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 9581280 - 9581320
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattattcat 335  Q
    |||||| ||||||||| |||| |||||||||||||||||||    
T  9581280 gtggccagggtttgaacccggaccttgcatatattattcat 9581320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 17328017 - 17328073
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| |||||| ||| |||| ||| || || ||||||||||||||||||||||||||    
T  17328017 ccggaccttgcttattttatgcattgtcccaaccgactgagctaagctcacgaggac 17328073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 43777051 - 43777119
Alignment:
Q  296 tggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacga 364  Q
    |||||| |||||||| |||  ||||||||||||||| |||||| || ||| ||||||||||||||||||    
T  43777051 tggccgaggtttgaacccgaaccttgcatatattatgcatggtccctaccaactgagctaagctcacga 43777119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 18870718 - 18870792
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||| ||||||||||  || ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  18870718 gtggccgaggtttgaatcatggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 18870792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 33223913 - 33223862
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||| ||| | ||| ||||||||||||||||||||||    
T  33223913 ccttgcatatattatgcattgtttctaccaactgagctaagctcacgaggac 33223862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 916507 - 916434
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  916507 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 916434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 9598507 - 9598433
Alignment:
Q  295 gtggccggggtttgaatc-cggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||||| ||| |||||||||| |||| ||| || || ||| ||||| ||||||||||||||||    
T  9598507 gtggtcggggtttgaatctcggaccttgcatattttatacattgtcccaaccaactgaactaagctcacgaggac 9598433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 29631254 - 29631180
Alignment:
Q  295 gtggccggggtttgaatccggt-ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||||||| |  ||||||||||||||| ||| || |  ||| ||||||||||||||| ||||||    
T  29631254 gtggccggggtttgaatcccgaaccttgcatatattatgcattgtccataccaactgagctaagctcatgaggac 29631180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 1757687 - 1757736
Alignment:
Q  319 ttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||| ||| ||||| ||| |||||| |||||||||||||||    
T  1757687 ttgcatatattatgcattgttcctaccaactgagttaagctcacgaggac 1757736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 6901470 - 6901515
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcac 362  Q
    ||||||||||||||| ||| ||||| ||| ||||||||||||||||    
T  6901470 ccttgcatatattatacattgttcctaccaactgagctaagctcac 6901515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 7868765 - 7868716
Alignment:
Q  319 ttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||| ||| ||||  ||| ||||||||||||||||||||||    
T  7868765 ttgcatatattatgcattgttcttaccaactgagctaagctcacgaggac 7868716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 25340917 - 25340990
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgagga 367  Q
    |||||||||||||||| || || |||||||||| |||| ||| || |  ||| |||||||||||||||||||||    
T  25340917 gtggccggggtttgaaccccggaccttgcatattttatgcattgtccataccaactgagctaagctcacgagga 25340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 35548287 - 35548343
Alignment:
Q  300 cggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaa 356  Q
    ||||||||||||||||  |||||||||||||| ||| ||||  ||| ||||||||||    
T  35548287 cggggtttgaatccggagcttgcatatattatacattgttcataccaactgagctaa 35548343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 38024329 - 38024361
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatata 327  Q
    ||||||||||||||||||||| |||||||||||    
T  38024329 gtggccggggtttgaatccggaccttgcatata 38024361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 43490433 - 43490481
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgag 365  Q
    ||||||||||||||| ||| ||||  ||| |||||||||||||||||||    
T  43490433 ccttgcatatattatgcattgttcataccaactgagctaagctcacgag 43490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 37098497 - 37098548
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||||||| || || ||| ||||||||||||||||||||||    
T  37098497 ccttgcatatattattcattgtccctaccaactgagctaagctcacgaggac 37098548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 42045365 - 42045439
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||| | ||||||||||||||| ||| || |  ||| ||||||||||||||||||||||    
T  42045365 gtggccggggtttgaactccagaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggac 42045439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 21400039 - 21400090
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  21400039 ccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 21400090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 37045162 - 37045213
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||| ||||| ||| |||||||| |||||||||||||    
T  37045162 ccttgcatatattatgcattgttcctaccaactgagctgagctcacgaggac 37045213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 48681949 - 48682000
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||| ||||  ||| ||||||||||||||||||||||    
T  48681949 ccttgcatatattatgcattgttcataccaactgagctaagctcacgaggac 48682000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 17139510 - 17139584
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||| || || ||||| ||||||||| ||| || || ||| ||||||||||||||||||||||    
T  17139510 gtggtcggggtttgaaccccggaccttgaatatattatgcattgtccctaccaactgagctaagctcacgaggac 17139584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 41763148 - 41763222
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || || |||||||||| |||| |||  | || ||| ||||||||||||||||||||||    
T  41763148 gtggccggggtttgaaccccggaccttgcatattttatgcattatccctaccaactgagctaagctcacgaggac 41763222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 16533028 - 16533097
Alignment:
Q  297 ggccggggtttgaatccg-gtccttgcatatattattcatggttcccaccgactgagctaagctcacgag 365  Q
    |||||||||||||||||  | ||||||||||||||| ||| ||||| ||| || ||||||| ||||||||    
T  16533028 ggccggggtttgaatcctagaccttgcatatattatgcattgttcctaccaaccgagctaaactcacgag 16533097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 44243935 - 44243867
Alignment:
Q  301 ggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||| || || |||| |||||||||| ||| ||||| ||| |||||||||| |||||||||||    
T  44243935 ggggtttgaactctggaccttacatatattatgcattgttcctaccaactgagctaaactcacgaggac 44243867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 56851 - 56778
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||| |||||||||| | || ||||||||||||||| ||| || |  ||| ||||||||||||||||||||||    
T  56851 gtggctggggtttgaaactggaccttgcatatattatacattgtccataccaactgagctaagctcacgaggac 56778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 3953500 - 3953436
Alignment:
Q  303 ggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgagga 367  Q
    |||||||| |||  ||||||||||||||| ||| || |  |||||||||||||||||||||||||    
T  3953500 ggtttgaacccgaaccttgcatatattatgcattgtccataccgactgagctaagctcacgagga 3953436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 10327021 - 10326949
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgagga 367  Q
    ||||||| |||||||| | || ||||||||||||||| ||| |||| |||| ||||||||||| | |||||||    
T  10327021 gtggccgaggtttgaacctggaccttgcatatattatgcattgttcacaccaactgagctaagtttacgagga 10326949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 46207821 - 46207754
Alignment:
Q  301 ggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||| |||| | |||||||| |||| ||| ||||  ||| ||||||||||||||||||||||    
T  46207821 ggggtttgaacccggacattgcatattttatgcattgttcataccaactgagctaagctcacgaggac 46207754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 3671892 - 3671822
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacga 364  Q
    |||| ||||||||||| ||| | ||||||||||||||| ||| ||||  ||||||||||||||| ||||||    
T  3671892 gtggtcggggtttgaactccagaccttgcatatattatgcattgttcataccgactgagctaagatcacga 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 19416582 - 19416508
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || || |||||||||| |||| ||| || |  ||| ||||||||||||||||||||||    
T  19416582 gtggccggggtttgaaccccggaccttgcatattttatgcattgtccataccaactgagctaagctcacgaggac 19416508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 20763222 - 20763149
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  20763222 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 20763149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 27462429 - 27462503
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| || || ||||||||||||||| ||| || |  ||| ||||||||| ||||||||||||    
T  27462429 gtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctatgctcacgaggac 27462503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 29488788 - 29488715
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  29488788 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 29488715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 33232390 - 33232463
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  33232390 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 33232463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 34284532 - 34284605
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  34284532 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 34284605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 18505656 - 18505721
Alignment:
Q  300 cggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgag 365  Q
    ||||||||||| ||||  ||||||||| |||| ||| || || ||| |||||||||||||||||||    
T  18505656 cggggtttgaacccggatcttgcatattttatgcattgtccctaccaactgagctaagctcacgag 18505721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 7670484 - 7670432
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacga 364  Q
    |||| ||||||||||||||| ||| ||||  ||| ||||||||||||||||||    
T  7670484 ccggaccttgcatatattatgcattgttcaaaccaactgagctaagctcacga 7670432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 10244777 - 10244721
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||||||| ||| || |  ||| ||||||||||||||||||||||    
T  10244777 ccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggac 10244721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 21993248 - 21993176
Alignment:
Q  296 tggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| || | |||||||||| |||| ||| || |  ||| |||||| |||||||||||||||    
T  21993248 tggccggggtttgaaacccggccttgcatattttatgcattgtccataccaactgagttaagctcacgaggac 21993176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 20799405 - 20799461
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  20799405 ccggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 20799461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 50362155 - 50362206
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||| || || ||| ||||||||||||||||||||||    
T  50362155 ccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 50362206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 7230348 - 7230274
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||| |||||||| || || ||||||||||||||| ||| || |  ||| ||||||||||||||||||||||    
T  7230348 gtggccgaggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggac 7230274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 10261762 - 10261835
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  10261762 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 10261835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 21562693 - 21562620
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  21562693 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 21562620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 26926703 - 26926776
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  26926703 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 26926776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 35287500 - 35287574
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||| ||| || || |||||||||| |||| ||| ||||  ||| ||||||||||||||||||||||    
T  35287500 gtggccggggttggaaccccggaccttgcatattttatgcattgttcataccaactgagctaagctcacgaggac 35287574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 43330214 - 43330141
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  43330214 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 43330141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 51450280 - 51450207
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  51450280 gtggccggggtttgaactccggaccttgcatatcttatgcattgt-cctaccaactaagctaagctcacgaggac 51450207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 14577501 - 14577574
Alignment:
Q  296 tggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||||| | ||||||||||||| ||| || |  ||| |||||||||| |||||||||||    
T  14577501 tggccggggtttgaactccggactttgcatatattatgcattgtccttaccaactgagctaaactcacgaggac 14577574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 3648897 - 3648933
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattat 331  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  3648897 gtggccgggatttgaatccggaccttgcatatattat 3648933  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 3936695 - 3936627
Alignment:
Q  295 gtggccggggtttgaatcc-ggtccttgcatatattattcatggttcccaccgactgagctaagctcac 362  Q
    |||||||||||| ||| || || ||||||||||||||| ||| ||||  ||| ||||||||||||||||    
T  3936695 gtggccggggttcgaaccccggaccttgcatatattatgcattgttcataccaactgagctaagctcac 3936627  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 23304027 - 23304083
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||||||| | | || || ||| ||||||||||||||||||||||    
T  23304027 ccggaccttgcatatattatgccttgtccctaccaactgagctaagctcacgaggac 23304083  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 56205014 - 56204978
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattat 331  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  56205014 gtggccgaggtttgaatccggaccttgcatatattat 56204978  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 247727 - 247654
Alignment:
Q  295 gtggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| || || ||| ||| ||||||||||||||||||    
T  247727 gtggccggggtttgaactccggaccttgcatattttatgcattgt-cctaccaactaagctaagctcacgaggac 247654  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 10780122 - 10780171
Alignment:
Q  316 tccttgcatatattattcatggttcccaccgactgagctaagctcacgag 365  Q
    |||||||||||||||| ||| || || ||| |||||||||||||||||||    
T  10780122 tccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 10780171  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 13496179 - 13496110
Alignment:
Q  300 cggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||| ||||| ||||||||||||||| ||| ||||  | | |||||| |||||||||||||||    
T  13496179 cggggtttgaactccggaccttgcatatattatgcattgttcatatcaactgagttaagctcacgaggac 13496110  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 21296825 - 21296752
Alignment:
Q  295 gtggccggggtttgaatccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||| |||||| | || |||||||||| |||| ||| || || ||| |||||||||| |||||||||||    
T  21296825 gtggccgggatttgaacctggaccttgcatattttatgcattgtcccaaccaactgagctaaactcacgaggac 21296752  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 1514176 - 1514228
Alignment:
Q  316 tccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||||||||||||||| ||| || |  ||| ||||||||||||||||||||||    
T  1514176 tccttgcatatattatacattgtcctaaccaactgagctaagctcacgaggac 1514228  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 9111097 - 9111041
Alignment:
Q  312 ccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    |||| ||||||||||||||| ||| ||||  ||| ||||| ||||||||||||||||    
T  9111097 ccggaccttgcatatattatgcattgttcataccaactgaactaagctcacgaggac 9111041  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 33938695 - 33938743
Alignment:
Q  317 ccttgcatatattattcatggttcccaccgactgagctaagctcacgag 365  Q
    ||||||||||||||| ||| ||||  ||| |||||||||||||||||||    
T  33938695 ccttgcatatattatgcattgttcataccaactgagctaagctcacgag 33938743  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 239874 - 239801
Alignment:
Q  296 tggccggggtttgaa-tccggtccttgcatatattattcatggttcccaccgactgagctaagctcacgaggac 368  Q
    ||||||||||||||| ||||| | ||||||||||||| ||| || |  ||| |||||||||| |||||||||||    
T  239874 tggccggggtttgaactccggactttgcatatattatgcattgtccttaccaactgagctaaactcacgaggac 239801  T

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