View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_high_15 (Length: 341)
Name: NF21294_high_15
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 39161251 - 39161519
Alignment:
| Q |
1 |
gtgtgatctgatttcaggttgtggcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggtgataaagctaatgcttga |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39161251 |
gtgtgatctgacttcaggttgtggcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggtgataaagctaatgcttga |
39161350 |
T |
|
| Q |
101 |
aattcggttcaaattggagattaaatttttggaacccttacccttctgctattaaacaaaaatccttgagtctattgttgttttaaaactttggaaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39161351 |
aattcggttcaaattggagattaaatttttggaacccttacccttctgctattaaacaaaaatccttgagtctattgttgttttaatactttggaaattt |
39161450 |
T |
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| Q |
201 |
tgtaccacagccagaactgaagtacccacatctatttccaaagggttccatttgggataagtaagtaga |
269 |
Q |
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| T |
39161451 |
tgtaccacagccagaactgaagtacccacatctatttccaaagggttccatttgggataagtaagtaga |
39161519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 2621483 - 2621559
Alignment:
| Q |
6 |
atctgatttcaggttgtggcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggt |
82 |
Q |
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| T |
2621483 |
atctgatttcaggttgcagctgcttggggagtaggattggtcttcggaccagcgttgggaggttatttggctcaggt |
2621559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 2606953 - 2607011
Alignment:
| Q |
24 |
gcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggt |
82 |
Q |
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| T |
2606953 |
gcagcttggggcataggtttaataattggaccagctttgggaggttatttggctcaggt |
2607011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 16528944 - 16528866
Alignment:
| Q |
4 |
tgatctgatttcaggttgtggcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggt |
82 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||| | ||||| || ||| ||||||| |||||||||||||| |
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| T |
16528944 |
tgatatgatttcaggttagtgcagcttggggcgtaggtttaattattggcccggcaataggaggctatttggctcaggt |
16528866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16589092 - 16589011
Alignment:
| Q |
1 |
gtgtgatctgatttcaggttgtggcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggt |
82 |
Q |
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||||||| |||||||||||| ||||||||||| |||||||| | |||| |||||| ||||||| |||||||||||||| |
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| T |
16589092 |
gtgtgatatgatttcaggttagtgcagcttggggcataggtttaattgttggcccagcaataggaggctatttggctcaggt |
16589011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 16520303 - 16520247
Alignment:
| Q |
27 |
gcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggtg |
83 |
Q |
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||||||||| ||||||| ||||||| |||||||| ||||| ||||||||||||||| |
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| T |
16520303 |
gcttggggaacaggtttaatcattggaccagcattgggaggctatttggctcaggtg |
16520247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 26370265 - 26370207
Alignment:
| Q |
24 |
gcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggt |
82 |
Q |
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||||||||||| |||||||| | ||||| ||||| || |||||||||||||||||||| |
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| T |
26370265 |
gcagcttggggcataggtttaataattggaccagctttgggaggttatttggctcaggt |
26370207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 16570361 - 16570288
Alignment:
| Q |
9 |
tgatttcaggttgtggcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggt |
82 |
Q |
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|||||||||||| ||||||||||| ||||| ||| | |||| |||||| ||||||| |||||||||||||| |
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| T |
16570361 |
tgatttcaggttagtgcagcttggggtgtaggcttaattgttggcccagcaataggaggctatttggctcaggt |
16570288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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