View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21294_high_16 (Length: 321)

Name: NF21294_high_16
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21294_high_16
NF21294_high_16
[»] chr1 (1 HSPs)
chr1 (15-312)||(5066922-5067219)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 5067219 - 5066922
Alignment:
Q  15 aaagcaacatttcttctatgtccaacagcataactctttgatctaggataagaatcagcaacaaaaccaacttttccttcaacaaaggaatcaaatggca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5067219 aaagcaacatttcttctatgtccaacagcataactctttgatctaggataagaatcagcaacaaaaccaacttttccttcaacaaaggaatcaaatggca 5067120  T
Q  115 tatcctcatcaatcttagccattccaacactactagacttaggtaaccctttatgcaatttctgttgttgttgttgatgttgctgcttgagaactaaatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5067119 tatcctcatcaatcttagccattccaacactactagacttaggtaaccctttatgcaatttctgttgttgttgttgatgttgctgcttgagaactaaatc 5067020  T
Q  215 cacatcaattctattacctaaagttctagcagaagcagctctaacaagctcggcaaaatcttcattaccctctaatgatgctgatgatcttcttgatg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5067019 cacatcaattctattacctaaagttctagcagaagcagctctaacaagctcggcaaaatcttcattaccctctaatgatgctgatgatcttcttgatg 5066922  T

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