View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_high_23 (Length: 238)
Name: NF21294_high_23
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 53136875 - 53136701
Alignment:
| Q |
47 |
tgtgcatcaaaagcttcaaggcacnnnnnnnttcaaaatgagtataatactttgaggttctggcagccaagtttaaatcattactgcaaaggggctgaag |
146 |
Q |
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| T |
53136875 |
tgtgcatcaaaagcttcaaggcacaaaaaaattcaaaatgagtataatactttgaggttctggcagccaagtttaaatcattactgcaaaggggctgaag |
53136776 |
T |
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| Q |
147 |
gacggtctacatatcaagaatgcaatggaaaatttgtagtgaaagcggcacctgaacaatcttttgaatctgaac |
221 |
Q |
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| T |
53136775 |
gacggtctacatatcaagaatgcaatggaaaatttgtagtgaaagcggcacctgaacaatcttttgaatctgaac |
53136701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8706839 - 8706896
Alignment:
| Q |
1 |
tgatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatcaaaa |
58 |
Q |
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| T |
8706839 |
tgatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatcaaaa |
8706896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 14384686 - 14384633
Alignment:
| Q |
2 |
gatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatca |
55 |
Q |
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| T |
14384686 |
gatacttcaacggcttttcttgaacatcctagttcaggcgaatactatgcatca |
14384633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 8692068 - 8692121
Alignment:
| Q |
2 |
gatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatca |
55 |
Q |
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| T |
8692068 |
gatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatca |
8692121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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