View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21294_high_4 (Length: 595)

Name: NF21294_high_4
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21294_high_4
NF21294_high_4
[»] scaffold0086 (3 HSPs)
scaffold0086 (192-475)||(41201-41484)
scaffold0086 (192-419)||(37424-37653)
scaffold0086 (482-558)||(41506-41580)
[»] chr8 (3 HSPs)
chr8 (182-454)||(9339246-9339509)
chr8 (183-338)||(44316996-44317151)
chr8 (183-338)||(44313191-44313339)
[»] chr6 (2 HSPs)
chr6 (183-338)||(34099553-34099708)
chr6 (181-338)||(34095917-34096074)
[»] chr2 (2 HSPs)
chr2 (171-338)||(21610701-21610868)
chr2 (196-303)||(19429862-19429966)
[»] scaffold0200 (1 HSPs)
scaffold0200 (181-338)||(29463-29620)
[»] chr1 (3 HSPs)
chr1 (182-339)||(22067610-22067767)
chr1 (186-313)||(22068151-22068278)
chr1 (198-339)||(4673360-4673500)
[»] chr3 (3 HSPs)
chr3 (182-381)||(21144115-21144312)
chr3 (183-338)||(21145389-21145540)
chr3 (182-328)||(4167731-4167875)
[»] chr5 (1 HSPs)
chr5 (16-124)||(30042712-30042819)
[»] chr4 (1 HSPs)
chr4 (224-266)||(6686491-6686533)


Alignment Details
Target: scaffold0086 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 192 - 475
Target Start/End: Original strand, 41201 - 41484
Alignment:
Q  192 gaagacctgcaaaa-caaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacccttccaagat 290  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41201 gaagacctgcaaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacccttccaagat 41300  T
Q  291 ttaacagaccctttccgacaagccgaggattcagaactgacaagagattagtcaatgacaggtagtgtaaacc--caaaaagaattgaaagtgggagtaa 388  Q
     |||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |   | ||||||||||||||||||||||    
T  41301 ataacagaccctgcccgacaagccaaagattcagaactgacaagagattagtcaatgacaggtagtgtaaaactagagaaagaattgaaagtgggagtaa 41400  T
Q  389 gttatagtttgtttggtttcagactg-tttttcttcctttttcgtattgatcaaagcaatatatatataattaaaggctgattcaaaa 475  Q
    |||||||||||||| ||||||||||| |||||||  | ||  ||||||||||||| |||||||||||    |||||||||||||||||    
T  41401 gttatagtttgttttgtttcagactgttttttctgtccttgacgtattgatcaaatcaatatatata----taaaggctgattcaaaa 41484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 192 - 419
Target Start/End: Original strand, 37424 - 37653
Alignment:
Q  192 gaagacctgcaaaa-caaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacccttccaagat 290  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  37424 gaagacctgcaaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactgtcctcaaggactttccgcgtgtaaaacgctaacccttccaagat 37523  T
Q  291 ttaacagaccctttccgacaagccgaggattcagaactgacaagagattagtcaatgacaggtagtgt-aaacccaaaaagaattgaaagtgggagtaag 389  Q
     ||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| ||||| |    
T  37524 ataacaaacccttcccggcaagccgaggattcagaactgacaagagattagtcaatgacaggtagtgtaaaactcagaaagaattgaaagtgagagtatg 37623  T
Q  390 ttatagtttgtttggtttcagactgttttt 419  Q
    ||||||||||||| ||||||||||||||||    
T  37624 ttatagtttgttttgtttcagactgttttt 37653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 558
Target Start/End: Original strand, 41506 - 41580
Alignment:
Q  482 aacgtgggagtaaaa-ttcagtttcttgaaacccaatcatggcataaatataaggatcttataaagctaatttattgt 558  Q
    ||||||||| ||||| |||||||||||||||| || |||| ||||||||||| |||||||||  ||||||||||||||    
T  41506 aacgtgggaataaaaattcagtttcttgaaacgcagtcat-gcataaatatagggatcttat--agctaatttattgt 41580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 182 - 454
Target Start/End: Original strand, 9339246 - 9339509
Alignment:
Q  182 aaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaaccc 281  Q
    ||||||||| |||||||||||||||||||||||||||||||      || |||| ||||||||  ||||||| |||||||||||||||||||||||||||    
T  9339246 aaaatgctacgaagacctgcaaaacaaaatcaataagaaag------gatgtgcggaacgcacattcctcaaagattttccgcgtgtaaaacgctaaccc 9339339  T
Q  282 ttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagattagtcaatgacaggtagtgtaaacccaaaaagaattgaaagtg 381  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |   |||| || |||||||| ||| |||||||||||||||    
T  9339340 ttccaagatttaacagaccctttccgacaaatcgaggattcagaactgacaagagatt-ttatgtgacgggaagtgtaaatccagaaagaattgaaagtg 9339438  T
Q  382 ggagtaagttatagtttgtttggtttcagactgtttttcttcctttttcgtattgatcaaagcaatatatata 454  Q
     ||||||||||||||||||||||||||||||  | |||||  |||| ||||||||||||||||||||||||||    
T  9339439 tgagtaagttatagtttgtttggtttcagac--tatttctcactttgtcgtattgatcaaagcaatatatata 9339509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 183 - 338
Target Start/End: Complemental strand, 44317151 - 44316996
Alignment:
Q  183 aaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaaccct 282  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44317151 aaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaaccct 44317052  T
Q  283 tccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat 338  Q
    |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  44317051 tccaagatataacagacccttcccggcaagccgaggattcagaactgacaagagat 44316996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 183 - 338
Target Start/End: Complemental strand, 44313339 - 44313191
Alignment:
Q  183 aaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaaccct 282  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  44313339 aaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaaccc- 44313241  T
Q  283 tccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat 338  Q
          || ||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  44313240 ------atataatagacccttcccggcaagccgaggattcagaactgacaagagat 44313191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 7e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 183 - 338
Target Start/End: Original strand, 34099553 - 34099708
Alignment:
Q  183 aaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaaccct 282  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34099553 aaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaaccct 34099652  T
Q  283 tccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat 338  Q
    |||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||    
T  34099653 tccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat 34099708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 34095917 - 34096074
Alignment:
Q  181 taaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacc 280  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  34095917 taaaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctggacgcactgtcctcaaggattttccgcgtgtaaaacgctaacc 34096016  T
Q  281 cttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat 338  Q
    |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||    
T  34096017 cttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat 34096074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 171 - 338
Target Start/End: Original strand, 21610701 - 21610868
Alignment:
Q  171 aactgctgtgtaaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaa 270  Q
    ||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  21610701 aactgttgtataaaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctggacgcactgtcctcaaggattttccgcgtgtaa 21610800  T
Q  271 aacgctaacccttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat 338  Q
    |||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||    
T  21610801 aacgctaacccttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat 21610868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 303
Target Start/End: Complemental strand, 19429966 - 19429862
Alignment:
Q  196 acctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacccttccaagatttaac 295  Q
    |||||||||||||||| ||| | |||| | ||||||||||||| | | || ||||||||||||||||||||||| || ||||||||  |||  |||||||    
T  19429966 acctgcaaaacaaaattaatgaaaaagtt-tgagacgtgctgatcacgctgtcctcaaggattttccgcgtgtagaatgctaaccc--ccagtatttaac 19429870  T
Q  296 agaccctt 303  Q
    ||||||||    
T  19429869 agaccctt 19429862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 181 - 338
Target Start/End: Complemental strand, 29620 - 29463
Alignment:
Q  181 taaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacc 280  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  29620 taaaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctggacgcactgtcctcaaggattttccgcgtgtaaaacgctaacc 29521  T
Q  281 cttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat 338  Q
    |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||    
T  29520 cttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat 29463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 182 - 339
Target Start/End: Original strand, 22067610 - 22067767
Alignment:
Q  182 aaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaaccc 281  Q
    ||||||||| |||||||| | ||||||||  ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  22067610 aaaatgctacgaagacctcctaaacaaaaataatgagaaagatctgagacgtgctgaatgcactgtcctcaaggattttccgcgtgtaaaacgctaaccc 22067709  T
Q  282 ttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagatt 339  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  22067710 ttccaagatttaacagacccttcccgacaagccgaagattcagaactgacaagagatt 22067767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 22068278 - 22068151
Alignment:
Q  186 tgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacccttcc 285  Q
    ||||| ||||||||||||||||||| |||| ||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |    
T  22068278 tgctacgaagacctgcaaaacaaaaacaatgagatagatctgagacgtgttgaacgcactgtcctcaaggatttttcgcgtgtaaaacgctaaccctttc 22068179  T
Q  286 aagatttaacagaccctttccgacaagc 313  Q
    |||||||||||||||||| |||||||||    
T  22068178 aagatttaacagacccttcccgacaagc 22068151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 198 - 339
Target Start/End: Original strand, 4673360 - 4673500
Alignment:
Q  198 ctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacccttccaagatttaacag 297  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  4673360 ctgcaaaacaaaaacaatgagatagatctgagacgtgctgaacgtactgtcctcaaggattttccgcatgt-aaacgctaacctttccaagatttaacag 4673458  T
Q  298 accctttccgacaagccgaggattcagaactgacaagagatt 339  Q
    ||||||||||| ||||||| ||||||||||| |||| |||||    
T  4673459 accctttccgataagccgaagattcagaactcacaaaagatt 4673500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 182 - 381
Target Start/End: Original strand, 21144115 - 21144312
Alignment:
Q  182 aaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaaccc 281  Q
    ||||||||| ||||||||||||||||||| || | ||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  21144115 aaaatgctacgaagacctgcaaaacaaaaacagtgagatagatctgagacgtgttgaacgcactgtcctcaaggattttccgcgtgtagaacgctaaccc 21144214  T
Q  282 ttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagattagtcaatgacaggtagtgtaaacccaaaaagaattgaaagtg 381  Q
    |||||| || ||||||||||||  || || ||| |||||||| ||||||||||||| || |   ||||||||||||| |||||| ||||||||| |||||    
T  21144215 ttccaaaatataacagacccttctcggcatgcctaggattcaaaactgacaagaga-tattatgtgacaggtagtgt-aacccagaaagaattggaagtg 21144312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 183 - 338
Target Start/End: Complemental strand, 21145540 - 21145389
Alignment:
Q  183 aaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaaccct 282  Q
    |||||||| ||||||||||||||||||| |  | ||| |||||||||||||| ||    |||| ||||||||||||||||||||||| ||| ||||||||    
T  21145540 aaatgctacgaagacctgcaaaacaaaaactttgagatagatctgagacgtgttg----cactgtcctcaaggattttccgcgtgtagaacactaaccct 21145445  T
Q  283 tccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat 338  Q
     ||||||| |||||||||||| | |  |||||||||||||||||||||| ||||||    
T  21145444 cccaagatataacagacccttcctggaaagccgaggattcagaactgacgagagat 21145389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 182 - 328
Target Start/End: Original strand, 4167731 - 4167875
Alignment:
Q  182 aaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaaccc 281  Q
    |||||||||  ||||||||||||||||||  | | | || ||||||||||||||||| |||||| ||||||| |||||||||| | || |||||||| ||    
T  4167731 aaaatgctacaaagacctgcaaaacaaaaatagtga-aatgatctgagacgtgctgatcgcactgtcctcaaagattttccgcatatagaacgctaatcc 4167829  T
Q  282 ttccaagatttaacagaccctttccgacaagccgaggattcagaact 328  Q
      ||| || ||||||||||||| || ||||| ||| |||||||||||    
T  4167830 -cccaggagttaacagacccttcccaacaagtcgaagattcagaact 4167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 30042712 - 30042819
Alignment:
Q  16 atgtgtaattaaaaggataataccttgtatgaaaatatggatgatggaaaatgcaacaagacaaagcacatgatcgaagaaggcaatggaactagcataa 115  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||  ||| | |    
T  30042712 atgtgtaattaaaaggattataccttgtatgaaaatatagatgatggaaattgcaacaagacaaagcacatgatcg-agaaggcaaaggaatcagcgtca 30042810  T
Q  116 tctttatct 124  Q
    |||||||||    
T  30042811 tctttatct 30042819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 6686533 - 6686491
Alignment:
Q  224 tctgagacgtgctgaacgcactatcctcaaggattttccgcgt 266  Q
    ||||||||||||||| |||||| |||| |||||||||||||||    
T  6686533 tctgagacgtgctgatcgcactgtccttaaggattttccgcgt 6686491  T

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