View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_low_11 (Length: 460)
Name: NF21294_low_11
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 405
Target Start/End: Complemental strand, 19173766 - 19173373
Alignment:
| Q |
10 |
catcatcaagcttatttatgtgtgcatctcgtttcaacaaaacttgagtatttagtcttcctctcaagcaaggcagccgatatgaataatcaaatggtgg |
109 |
Q |
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| T |
19173766 |
catcataaagcttatttatgtgtgcatctcgtttcaacaaaacttgagcatttagtcttcctctcaagcaaggcagccgatatgaataatcaaatggtgg |
19173667 |
T |
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| Q |
110 |
gcctaggaattttgaaagttaatgttgaaactatcactcgtttgaaagtttcgcatggtggagataggaagtaagccccacaacacaaagtggcgaagaa |
209 |
Q |
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| T |
19173666 |
gcctaggaattttgaaagttaatgttgaaactatcactcgtttgaaagttttacacagtggagataggaagtaagccccacaacaca--gtggcgaagaa |
19173569 |
T |
|
| Q |
210 |
caaatagaattttctacaaaagccggctaacggaggtattcctacgtatgaaaacatagtaatgcagaccgttatagccgaaataggattcagtctgcct |
309 |
Q |
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| T |
19173568 |
caaatagaatttactacaaaagccggctaacggaggtattcctacgtatgagaacatagtaatacagaccgttatagccgaaataggattcagtctgcct |
19173469 |
T |
|
| Q |
310 |
ctcttcgggaaggaggtcaagctgggcttctttaacctttagggagttcttctgctgatgaagttagggagctttgccagtctctctattgccctg |
405 |
Q |
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| T |
19173468 |
ctcttcgggaaggaggtcaagctgggcttctttaacctttagggagttcttctgctgatgaagttagggagctttgccagtctctctattgccctg |
19173373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 19173342 - 19173302
Alignment:
| Q |
406 |
ttgtaatgcttctatttcatactcagattttagtctgtttg |
446 |
Q |
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| T |
19173342 |
ttgtaatgcttctatttcatactcagattttagtctgtttg |
19173302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 25565003 - 25565083
Alignment:
| Q |
174 |
taggaagtaagccccacaacacaaagtggcgaagaacaaatagaattttctacaaaagccggctaacggaggtattcctac |
254 |
Q |
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| T |
25565003 |
taggaagtaagccccacaacccaaagcggcgaagaacaaatagaatttgctataaaagccggctaacgggggtattcctac |
25565083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 46435461 - 46435501
Alignment:
| Q |
195 |
caaagtggcgaagaacaaatagaattttctacaaaagccgg |
235 |
Q |
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| T |
46435461 |
caaagcggcaaagaacaaatagaatttgctacaaaagccgg |
46435501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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