View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_low_12 (Length: 435)
Name: NF21294_low_12
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 419
Target Start/End: Complemental strand, 15581271 - 15580893
Alignment:
| Q |
22 |
ttatctagcacactgtttcaacctaatatttacttacataccaaaatgagttcaagaaataatcataacaatttgggatattcacaaaaaccttcagata |
121 |
Q |
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| T |
15581271 |
ttatctagcacattgtttcaaccaaatatt-atttacataccaaaatgagttcaagaaataatcataataatttgggatattcacaaa------------ |
15581185 |
T |
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| Q |
122 |
agaaggaaaaaccttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagaaggagttggcctacaataatggtcctcgtcc |
221 |
Q |
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| T |
15581184 |
---------aaccttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagattgatatggcctacaacaatggtcctcctcc |
15581094 |
T |
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| Q |
222 |
tattgcaaatactgaaaatcgtcctgtaaatcagaatcctttggctaaccaaatggat---ggttacaacacttgatatggccaacatgcaggtatattg |
318 |
Q |
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| T |
15581093 |
tgtggcaaatactggaaatcttcctgcaaatcagaatcctttggctaaccaaatgaatattggttacaacacttgatatggccaacatgcaggtatattg |
15580994 |
T |
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| Q |
319 |
agaaactaggattgtatttgaattttcttacaaagagtaacaaattaataagtctcattaaatcttctaatctcctaatttctttacttatctcatttgt |
418 |
Q |
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| T |
15580993 |
agaaactaggattgtatttgaattttcttacaaacagtaacaaattaatatgtctcattaaatcttttaatctcctaatttcattacttatctcatttgt |
15580894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 15549888 - 15549767
Alignment:
| Q |
7 |
tcgaagaatatactattatctagcacactgtttcaacctaatatttacttacataccaaaatgagttcaagaaataatcataacaatttgggatattcac |
106 |
Q |
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| T |
15549888 |
tcgaaaaatatactattatctagcacattgtttcaacctaatatttacttacataccaaaatgagttcaagaaataatcataataatttgggacattcac |
15549789 |
T |
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| Q |
107 |
aaaaaccttcagataagaagga |
128 |
Q |
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| T |
15549788 |
aaaaactttcagataagaagga |
15549767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 15549781 - 15549703
Alignment:
| Q |
135 |
ttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagaaggagttggcctacaataatggt |
213 |
Q |
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| T |
15549781 |
ttcagataagaaggattcgagagaccctgctaagaatagtccaatcttaaaccagaaggatttggcctacaacaatggt |
15549703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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