View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21294_low_13 (Length: 391)
Name: NF21294_low_13
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 66 - 373
Target Start/End: Complemental strand, 24819570 - 24819244
Alignment:
| Q |
66 |
ttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaagcattcaata |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
24819570 |
ttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaag-agaaaata |
24819472 |
T |
|
| Q |
166 |
atgtggagactgaacatattactatggagcgttgaattaaaattgaatagagaggaaaagaatagcattagcaagctctataaattctt----------g |
255 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
24819471 |
atgtggagactgaacatattacgatggagcgttgaattaaaattgaatagagaggaaaagaa------tagcaagctctataaattcttggtaacatgag |
24819378 |
T |
|
| Q |
256 |
ttaacattggaaa---------------ctgacagtcaaaatacacgttggtatcagcacataggaaattggaattacaaagtggaatg-ttggtggatt |
339 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24819377 |
ttaacattggaaactgataaaattaagcctgacagtcaaaatacacgttggtatcagcacataggaaattggaattacaaagtggaatgtttggtggatt |
24819278 |
T |
|
| Q |
340 |
accagttaccacttagaagaattgaatgctttca |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
24819277 |
accagttaccacttagaagaattgaatgctttca |
24819244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 24819761 - 24819727
Alignment:
| Q |
40 |
caattgatgaacaatttaatactaatttgatcaaa |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24819761 |
caattgatgaacaatttaatactaatttgatcaaa |
24819727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 10426201 - 10426336
Alignment:
| Q |
68 |
gatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaagcattcaataat |
167 |
Q |
| |
|
|||||||||||| || |||||| ||| |||||| |||||||||||||||||||||| |||||| ||| ||||| |||||| | ||||| | |||||| |
|
|
| T |
10426201 |
gatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaatagggtggaaggataagggaaaatgggatag-gtgagaag-aaaaggagagaataat |
10426298 |
T |
|
| Q |
168 |
gtggagactgaacatattactatggagcgttgaattaa |
205 |
Q |
| |
|
||||||| | | ||||||| ||| ||||||||||||| |
|
|
| T |
10426299 |
gtggagaacggagatattacgatgaagcgttgaattaa |
10426336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University