View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21294_low_16 (Length: 344)
Name: NF21294_low_16
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 52874764 - 52874438
Alignment:
| Q |
1 |
tagtcaaagatgaaaggaaaggcatagtagcattcatgatgaggtaattcattgattataaatttccaatttaagcatcgttaaaacactagttaaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52874764 |
tagtcaaagatgaaaggaaaggcatagtagcattcatgatgaggtaattcattgattataaatttccaatttaagcatcgttaaaacactagttaaatga |
52874665 |
T |
|
| Q |
101 |
aagtgtaactttacatcatgatataccaaatgatttaaaagtcactccataacatatttaagaaactatcataaactagtacaaatataaggttacatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52874664 |
aagtgtaactttacatcatgatataccaaatgatttaaaagtcactccataacatatttaagaaactatcataaactagtacaaatataaggttacatga |
52874565 |
T |
|
| Q |
201 |
aaaaaccttgggagataattcattatagcgttcatcaagctgatcacgagcagttaagtctgaccataacgaagcacatataactgttccgacagacatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52874564 |
aaaaaccttgggagataattcattatagcgttcatcaagctgatcacgagcagttaagtctgaccataacgaagcacatataactgttccgacagacatc |
52874465 |
T |
|
| Q |
301 |
aaccacaaacatccaacagagaaatct |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
52874464 |
aaccacaaacatccaacagagaaatct |
52874438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University