View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_low_18 (Length: 339)
Name: NF21294_low_18
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 36002585 - 36002899
Alignment:
| Q |
7 |
tcgaagaatataacttccacaacttcagttccctgaaaaacaaattttaaaataataattatattagccaatgttgccatacatatttcataatcaaata |
106 |
Q |
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| T |
36002585 |
tcgaaaaatataacttcaacaacttcagttccctgaaaaacaaaatttaaaataataattatattagccaatgttgccatacatatttcataatcaaata |
36002684 |
T |
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| Q |
107 |
tatgcatgcattttttaatagaagtaattaagttttcgacttaccttgttatatttcaataaatcatacacttccttaggatcccacaatcgacttctac |
206 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36002685 |
tatgcatgcattttttaatagaagtaattgagttttcgacttaccttgttatatttcaataaatcatacacttccttaggatcccacaatcgacttctac |
36002784 |
T |
|
| Q |
207 |
ttccggggtctttaagagattctttcctaacaatctctcttcccatttctactaacaaatcatgcattgtaacttgatcataatgttcaatagttaagag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36002785 |
ttccggggtctttaagagattctttcctaacaatctctcttcccatttctactaacaaatcatgcattgtaacttgatcataatgttcaatagttaagag |
36002884 |
T |
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| Q |
307 |
tgctttatatagaag |
321 |
Q |
| |
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||||||||||||||| |
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| T |
36002885 |
tgctttatatagaag |
36002899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 89 - 273
Target Start/End: Original strand, 36023769 - 36023954
Alignment:
| Q |
89 |
atatttcataatcaaatatatgcatgcattttttaatagaagtaatt-aagttttcgacttaccttgttatatttcaataaatcatacacttccttagga |
187 |
Q |
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|||||||||||||||||||| |||||| |||| ||||||| |||| || || |||||||| |||||||||||| |||| | |||||| | ||| |
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| T |
36023769 |
atatttcataatcaaatatacacatgcacttttatatagaagaaattgaaaccatccccttacctttttatatttcaatgtatcacaaacttccatggga |
36023868 |
T |
|
| Q |
188 |
tcccacaatcgacttctacttccggggtctttaagagattctttcctaacaatctctcttcccatttctactaacaaatcatgcat |
273 |
Q |
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||||||||||||||||||||||| |||| |||| |||||| || | |||||||||||| ||||||||||||||||||||||||||| |
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| T |
36023869 |
tcccacaatcgacttctacttccagggtttttaggagattgttgcttaacaatctctcgtcccatttctactaacaaatcatgcat |
36023954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 35769261 - 35769186
Alignment:
| Q |
155 |
ttatatttcaataaatcatacacttccttaggatcccacaatcgacttctacttccggggtctttaagagattctt |
230 |
Q |
| |
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|||||||||| || ||| ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||||||| |
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| T |
35769261 |
ttatatttcagtacatcgtacacttccttgggatcccacaatcgacttctgcttccaggatctttgggagattctt |
35769186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 23454322 - 23454362
Alignment:
| Q |
234 |
taacaatctctcttcccatttctactaacaaatcatgcatt |
274 |
Q |
| |
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| T |
23454322 |
taacaatctctcgtcccatttcttgtaacaaatcatgcatt |
23454362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 12896791 - 12896670
Alignment:
| Q |
153 |
tgttatatttcaataaatcatacacttccttaggatcccacaatcgacttctacttccggggtctttaagagattctttcctaacaatctctcttcccat |
252 |
Q |
| |
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|||||| ||||| || |||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||| | |||||||||||| |||||| |
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| T |
12896791 |
tgttatttttcagtacatcatacacttcctcgggatcccacaatcgacttcttcttccggggttcttgggagattcttgcttaacaatctctcgtcccat |
12896692 |
T |
|
| Q |
253 |
ttctactaacaaatcatgcatt |
274 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
12896691 |
ttctactaacaaatcatgcatt |
12896670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 274
Target Start/End: Original strand, 16121921 - 16122067
Alignment:
| Q |
128 |
aagtaattaagttttcgacttaccttgttatatttcaataaatcatacacttccttaggatcccacaatcgacttctacttccggggtctttaagagatt |
227 |
Q |
| |
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|||||||||||| ||| |||||||||||| ||||| |||| ||||| | | || |||||||||||||||||||| ||||||||||||| ||| || |
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| T |
16121921 |
aagtaattaagtcttccacttaccttgttgtatttaaatacttcataaattaactcgggatcccacaatcgacttctttttccggggtctttcggagctt |
16122020 |
T |
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| Q |
228 |
ctttcctaacaatctctcttcccatttctactaacaaatcatgcatt |
274 |
Q |
| |
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||| | |||||||||||| |||||||||||| | ||||||||||||| |
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| T |
16122021 |
cttgcttaacaatctctcgtcccatttctacgaccaaatcatgcatt |
16122067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 16337279 - 16337133
Alignment:
| Q |
128 |
aagtaattaagttttcgacttaccttgttatatttcaataaatcatacacttccttaggatcccacaatcgacttctacttccggggtctttaagagatt |
227 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||| |||| ||||| | | || |||||||||||||||||||| ||||||||||||| ||| || |
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| T |
16337279 |
aagtaattaagtcttccacttaccttgttgtatttaaatacttcataaattaactcgggatcccacaatcgacttctttttccggggtctttcggagctt |
16337180 |
T |
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| Q |
228 |
ctttcctaacaatctctcttcccatttctactaacaaatcatgcatt |
274 |
Q |
| |
|
||| | |||||||||||| |||||||||||| | ||||||||||||| |
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| T |
16337179 |
cttgcttaacaatctctcgtcccatttctacgaccaaatcatgcatt |
16337133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 32634246 - 32634204
Alignment:
| Q |
155 |
ttatatttcaataaatcatacacttccttaggatcccacaatc |
197 |
Q |
| |
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|||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
32634246 |
ttatttttcaatacatcataaacttccttaggatcccacaatc |
32634204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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