View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21294_low_2 (Length: 782)

Name: NF21294_low_2
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21294_low_2
NF21294_low_2
[»] chr2 (1 HSPs)
chr2 (74-706)||(39191113-39191758)
[»] chr8 (8 HSPs)
chr8 (11-527)||(11544589-11545102)
chr8 (11-297)||(11563449-11563732)
chr8 (545-766)||(11544389-11544604)
chr8 (282-413)||(11563776-11563908)
chr8 (254-500)||(22688996-22689245)
chr8 (327-527)||(22655715-22655915)
chr8 (545-630)||(22655900-22655985)
chr8 (575-640)||(22689290-22689355)
[»] chr5 (7 HSPs)
chr5 (30-201)||(16799068-16799239)
chr5 (197-325)||(16793979-16794107)
chr5 (346-503)||(9815577-9815734)
chr5 (346-503)||(26354345-26354502)
chr5 (337-486)||(38434998-38435147)
chr5 (545-664)||(9815449-9815568)
chr5 (545-643)||(26354511-26354609)
[»] chr3 (39 HSPs)
chr3 (257-503)||(24839303-24839549)
chr3 (258-527)||(19956603-19956872)
chr3 (337-527)||(26653667-26653857)
chr3 (258-503)||(19858615-19858860)
chr3 (333-502)||(19838937-19839106)
chr3 (256-527)||(19819079-19819350)
chr3 (343-503)||(20015616-20015776)
chr3 (256-503)||(26647547-26647794)
chr3 (255-505)||(19832411-19832661)
chr3 (258-486)||(19854060-19854288)
chr3 (548-730)||(24839564-24839740)
chr3 (548-766)||(19944033-19944245)
chr3 (327-500)||(19951670-19951843)
chr3 (394-502)||(20036069-20036177)
chr3 (372-521)||(19812808-19812957)
chr3 (545-718)||(19956451-19956618)
chr3 (394-503)||(19944260-19944369)
chr3 (545-653)||(19838819-19838927)
chr3 (368-500)||(20033774-20033906)
chr3 (545-664)||(19818975-19819094)
chr3 (545-664)||(20036187-20036306)
chr3 (545-672)||(26653555-26653682)
chr3 (545-644)||(17115148-17115247)
chr3 (545-664)||(19832284-19832403)
chr3 (548-644)||(26647436-26647532)
chr3 (548-672)||(26652122-26652246)
chr3 (545-644)||(20046555-20046654)
chr3 (548-642)||(19951558-19951652)
chr3 (394-527)||(20046639-20046772)
chr3 (333-485)||(19849557-19849709)
chr3 (578-668)||(19849407-19849497)
chr3 (254-484)||(19990087-19990317)
chr3 (564-645)||(19812717-19812798)
chr3 (257-361)||(19948509-19948613)
chr3 (545-644)||(20015785-20015884)
chr3 (548-645)||(19853931-19854028)
chr3 (583-718)||(19858436-19858565)
chr3 (567-640)||(19989967-19990040)
chr3 (548-615)||(20033924-20033991)
[»] chr1 (4 HSPs)
chr1 (327-500)||(1717766-1717939)
chr1 (548-644)||(1717652-1717748)
chr1 (545-643)||(38483409-38483507)
chr1 (396-503)||(38483516-38483621)
[»] chr7 (4 HSPs)
chr7 (545-643)||(12495575-12495677)
chr7 (545-643)||(12519379-12519478)
chr7 (545-643)||(12579673-12579773)
chr7 (396-485)||(12581822-12581911)
[»] chr4 (1 HSPs)
chr4 (547-640)||(6397323-6397418)


Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 74 - 706
Target Start/End: Original strand, 39191113 - 39191758
Alignment:
Q  74 caatatcaacagagtttttctcagaattcaagccatcttcaacatcaccatcaacaatatcatctcccttcttagattttgaactatagtcacaagactt 173  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  39191113 caatatgaacagagtttttctcagaattcaagccatcttcaacaccaccatcagcaatatcatctcccttcttagcttttgaactatagtcacaagactt 39191212  T
Q  174 tccaaaagtaaca---------agtttaggaggaagaaactcaagtggaatctcagcatgagctgtacatgttgatgaacctgcacttctcttccaccac 264  Q
    |||||||||||||         || ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  39191213 tccaaaagtaacagtgccaacaagattaggaggaggaaactcaagtggaatctcagcatgatctgtacatgttgatgaacatgcacttctcttcaaccac 39191312  T
Q  265 gttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagcaatggttt 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  39191313 gttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgtataaacttgtttcagataagggtctgcagtaatttttccaagcaatggttt 39191412  T
Q  365 cattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatcc 464  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  39191413 cagtctcattgaatctaggcacacaatctggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctcaatagactcaaaacc 39191512  T
Q  465 aactagctcggaaactctcaaggacataacaaatgagaga--acattgttatccaaatccttcttctccttctttagaccaatatccaaatccttcttaa 562  Q
    ||||||||| ||||||||||| ||||||||||||||||||     || ||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  39191513 aactagctccgaaactctcaatgacataacaaatgagagattttttttttatccaaatccttctttttcttttttagaccaatatccaaatccttcttaa 39191612  T
Q  563 gtggtaccaaagtttcatcctttggataaaaca-ttccacac-ttatcagcatattgaacatatggacgccaaagaaaatcatccttagccgaatccaat 660  Q
    | ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39191613 gcggtaccaaagtttcatcctttggataaaacatttctacactttatcagcatattgaacatatggacgccaaagaaaatcatccttagccgaatccaat 39191712  T
Q  661 gccaacctcacagtcacactgtcaactttcaagggcttaaccatat 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39191713 gccaacctcacagtcacactgtcaactttcaagggcttaaccatat 39191758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 527
Target Start/End: Complemental strand, 11545102 - 11544589
Alignment:
Q  11 catcatcagccatatttttctcagcattcaaaccatcttcaacaaaattatcagtgccggtaacaatatcaacagagtttttctcagaattcaagccatc 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11545102 catcaacagccatatttttctcagcattcaaaccatcttcaacagaattatcagagccggtaacaatatcaacagagtttttctcagaattcaagccatc 11545003  T
Q  111 ttcaacatcaccatcaacaatatcatctcccttcttagattttgaactatagtcacaagactttccaaaagtaacaagtttaggaggaagaaactcaagt 210  Q
    |||||||||||||||||||||||||||||||||   || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  11545002 ttcaacatcaccatcaacaatatcatctccctt---agcttttgaactatagtcacaaggctttccaaaagtaacaagtttaggatgaagaaactcaagt 11544906  T
Q  211 ggaatctcagcatgagctgtacatgttgatgaacctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11544905 ggaatctcagcatgagctgtacatgttgatgaacctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaa 11544806  T
Q  311 tgaataaacttgcattagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccat 410  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11544805 tgaataaacttgcatcagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccat 11544706  T
Q  411 tctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagagaacattg 510  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||   ||     
T  11544705 tccaaattgcatagcaactctatgtggaagatattgctcaatagactcaaaaccaactagctcggaaactctcaatgacataacaaatgagagatttttt 11544606  T
Q  511 ttatccaaatccttctt 527  Q
    |||||||||||||||||    
T  11544605 ttatccaaatccttctt 11544589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 11563449 - 11563732
Alignment:
Q  11 catcatcagccatatttttctcagcattcaaaccatcttcaacaaaattatcagtgccggtaacaatatcaacagagtttttctcagaattcaagccatc 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11563449 catcaacagccatatttttctcagcattcaaaccatcttcaacagaattatcagagccggtaacaatatcaacagagtttttctcagaattcaagccatc 11563548  T
Q  111 ttcaacatcaccatcaacaatatcatctcccttcttagattttgaactatagtcacaagactttccaaaagtaacaagtttaggaggaagaaactcaagt 210  Q
    |||||||||||||||||||||||||||||||||   || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  11563549 ttcaacatcaccatcaacaatatcatctccctt---agcttttgaactatagtcacaaggctttccaaaagtaacaagtttaggatgaagaaactcaagt 11563645  T
Q  211 ggaatctcagcatgagctgtacatgttgatgaacctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11563646 ggaatctcagcatgagctgtacatgttgatgaacctgcacttctcttccaccatgttgcataacgtgtggtaacaccggcatcaaaa 11563732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 545 - 766
Target Start/End: Complemental strand, 11544604 - 11544389
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||    
T  11544604 tatccaaatccttcttaagcggtaccaaagtttcatcatttggataaaacatttcaaacttatcggcatattgaacatatgggcgccaaagaaaatcatc 11544505  T
Q  645 cttagccgaatccaatgccaacctcacagtcacactgtcaactttcaagggcttaaccatattccacctcaacagtacatggtctccattttttatcgac 744  Q
    |||||| ||||| |||||||||||      |||| | |||| ||||||||| ||||||| || |||||||| |||||||||||||||||| || ||| ||    
T  11544504 cttagctgaatctaatgccaacct------cacattatcaattttcaagggtttaaccaaatgccacctcatcagtacatggtctccattgttgatcaac 11544411  T
Q  745 ttgggttttggttgcaagtttt 766  Q
    ||||||||||||||||| ||||    
T  11544410 ttgggttttggttgcaaatttt 11544389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 11563776 - 11563908
Alignment:
Q  282 aacaccggcatcaaaaa-atctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatct 380  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11563776 aacaccggcatcaatatcatctagatggaatgaataaacttgcatcagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatct 11563875  T
Q  381 aggcacacaagctggaacatcttgatccattct 413  Q
    |||||||||||||||||||||||||||||||||    
T  11563876 aggcacacaagctggaacatcttgatccattct 11563908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 254 - 500
Target Start/End: Original strand, 22688996 - 22689245
Alignment:
Q  254 tcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaa--tga-ataaacttgcattagataagggtctgcagtaattttt 350  Q
    ||||||||||| |||||||||  ||||||||||| || |  |||||||| |||||||  | | ||||||||| || ||| || |||||||| |||||||     
T  22688996 tcttccaccactttgcataacaagtggtaacaccagccttgaaaaatctggatggaaaataatataaacttgtatcagaaaaaggtctgcaataattttc 22689095  T
Q  351 ccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctca 450  Q
    |||||||||||  | | |||   |||||||||  ||| || | ||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||     
T  22689096 ccaagcaatggcattagtctttctgaatctagagacataaccaggaacatcttgatccattccaaactgcctagcaactctatgtggtagatattgctct 22689195  T
Q  451 atagaatcaaatccaactagctcggaaactctcaaggacataacaaatga 500  Q
    ||||| ||||||||||||||||| |||||||||||| | |||||||||||    
T  22689196 atagactcaaatccaactagctcagaaactctcaagcatataacaaatga 22689245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 327 - 527
Target Start/End: Original strand, 22655715 - 22655915
Alignment:
Q  327 agataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagca 426  Q
    ||||| |||||||||||| |||||||||||||||  || | |||||||||| ||||  ||| || | |||||||||||||| |||| ||||||||||| |    
T  22655715 agatatgggtctgcagtagtttttccaagcaatgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagaa 22655814  T
Q  427 actctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttct 526  Q
    |||||| ||||||||||||  || ||||| ||||||||||| ||||| ||||| |||||  | | ||||||||||||||  ||  |||||||||||||||    
T  22655815 actctacgtggaagatatttttctatagactcaaatccaacaagctcagaaaccctcaaacatacaacaaatgagagaatttttgtatccaaatccttct 22655914  T
Q  527 t 527  Q
    |    
T  22655915 t 22655915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 545 - 630
Target Start/End: Original strand, 22655900 - 22655985
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgc 630  Q
    |||||||||||||||||| |||||||||| ||||||| || ||||||||||   | |||||||||| |||| ||||||||||||||    
T  22655900 tatccaaatccttcttaaatggtaccaaaatttcatcattaggataaaacagctcgcacttatcagaatatcgaacatatggacgc 22655985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 575 - 640
Target Start/End: Original strand, 22689290 - 22689355
Alignment:
Q  575 tttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaat 640  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||| |||||||||| |||||    
T  22689290 tttcatcctttggataaaacactccacacttatcagcatatctaacataaggacgccaaataaaat 22689355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 4e-80; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 16799239 - 16799068
Alignment:
Q  30 ctcagcattcaaaccatcttcaacaaaattatcagtgccggtaacaatatcaacagagtttttctcagaattcaagccatcttcaacatcaccatcaaca 129  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16799239 ctcagcattcaaaccatcttcaacagaattattagagccggtaacaatatcaacagagtttttctcagaattcaagccatcttcaacatcaccatcaaca 16799140  T
Q  130 atatcatctcccttcttagattttgaactatagtcacaagactttccaaaagtaacaagtttaggaggaaga 201  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16799139 atatcatctccctacttagcttttgaactatagtcacaagactttccaaaagtaacaagtttaggaggaaga 16799068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 16794107 - 16793979
Alignment:
Q  197 gaagaaactcaagtggaatctcagcatgagctgtacatgttgatgaacctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaa 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16794107 gaagaaactcaagtggaatctcagcatgagctgtacatgttgatgaacctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcataaaa 16794008  T
Q  297 aaatctagatggaatgaataaacttgcat 325  Q
    |||| ||||||||||||||||||||||||    
T  16794007 aaatgtagatggaatgaataaacttgcat 16793979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 346 - 503
Target Start/End: Complemental strand, 9815734 - 9815577
Alignment:
Q  346 tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatatt 445  Q
    ||||||||||| |||  || | |||||||||||||||||||| ||| |||||||||||||||||||  |||||||||||||||||||||||| | ||| |    
T  9815734 tttttccaagccatgagtttagtctcattgaatctaggcacataagttggaacatcttgatccatttcaaattgcatagcaactctatgtggcaaatact 9815635  T
Q  446 gctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagag 503  Q
    |||| ||||| || |||||||| |||||||||||||||||| | ||||||||||||||    
T  9815634 gctctatagagtcgaatccaacaagctcggaaactctcaagcatataacaaatgagag 9815577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 346 - 503
Target Start/End: Original strand, 26354345 - 26354502
Alignment:
Q  346 tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatatt 445  Q
    |||||||||||||||  || | ||||||| |||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||| | ||| |    
T  26354345 tttttccaagcaatgaatttagtctcattaaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact 26354444  T
Q  446 gctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagag 503  Q
    |||| ||||| ||||||||||| ||||| |||||||||| | | ||||||||||||||    
T  26354445 gctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagag 26354502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 38434998 - 38435147
Alignment:
Q  337 ctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtg 436  Q
    |||| ||| |||||| ||||||| | || | ||||||| || ||| ||||| ||  ||||||||||||||| |||||||||| ||||||| |||||||||    
T  38434998 ctgcggtagtttttctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctctatgtg 38435097  T
Q  437 gaagatattgctcaatagaatcaaatccaactagctcggaaactctcaag 486  Q
    | |||||||| |||||||| |||||||||| ||||| |||||||||||||    
T  38435098 gtagatattgttcaatagagtcaaatccaattagctaggaaactctcaag 38435147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 545 - 664
Target Start/End: Complemental strand, 9815568 - 9815449
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    |||||||||| ||||||| ||||||||||    |||| |||||||||||||  || || ||||||||||||  || ||||||||||||||||||||||||    
T  9815568 tatccaaatctttcttaaatggtaccaaaagcgcatcatttggataaaacacaccgcagttatcagcatatctaaaatatggacgccaaagaaaatcatc 9815469  T
Q  645 cttagccgaatccaatgcca 664  Q
    | ||||||| || |||||||    
T  9815468 catagccgagtctaatgcca 9815449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 545 - 643
Target Start/End: Original strand, 26354511 - 26354609
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcat 643  Q
    |||||||||| ||||||| ||||||| || || |||| ||||||||||| |  ||||| | ||| ||||||  || |||||||||||||||||||||||    
T  26354511 tatccaaatctttcttaaatggtaccgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcat 26354609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 257 - 503
Target Start/End: Original strand, 24839303 - 24839549
Alignment:
Q  257 tccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagc 356  Q
    |||||||| |||| ||||||| ||||| ||| || |||||| ||||||||||||   ||||||||| || ||||||||||||| ||||||||||||||||    
T  24839303 tccaccactttgcgtaacgtgaggtaataccagcctcaaaatatctagatggaaaatataaacttgtatcagataagggtctggagtaatttttccaagc 24839402  T
Q  357 aatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaa 456  Q
    ||||| || | ||||||||| ||||| |||| || | |||||||||||||| | ||  ||||||||||||||||||||||| |||||||| || |||||     
T  24839403 aatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcaactctatgtggtagatattgttctatagac 24839502  T
Q  457 tcaaatccaactagctcggaaactctcaaggacataacaaatgagag 503  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||||    
T  24839503 tcaaatccaactagctcagaaactctcaagaatataacaaatgagag 24839549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 258 - 527
Target Start/End: Complemental strand, 19956872 - 19956603
Alignment:
Q  258 ccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagca 357  Q
    ||||||| |||||||||||||||||||| | || ||||| ||||| | |||||   | ||  ||  || | ||| |||||||||||| ||||||||||||    
T  19956872 ccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcatatatgggtctgcagtagtttttccaagca 19956773  T
Q  358 atggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaat 457  Q
    |||  || | |||||||||| ||||  ||| || | |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| |    
T  19956772 atgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagact 19956673  T
Q  458 caaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttctt 527  Q
    |||||||||| |||||||||||||||||| | ||||||||||||| ||  ||  ||||||||||||||||    
T  19956672 caaatccaaccagctcggaaactctcaagcatataacaaatgagataatttttgtatccaaatccttctt 19956603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 337 - 527
Target Start/End: Complemental strand, 26653857 - 26653667
Alignment:
Q  337 ctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtg 436  Q
    |||||||| |||| ||||||||||  || | |||||||||| |||| |||| ||  |||||||||||| || |||| |||||||||||||||||||||||    
T  26653857 ctgcagtagttttcccaagcaatgtatttagtctcattgaacctagccacataacttggaacatcttggtcaattccaaattgcatagcaactctatgtg 26653758  T
Q  437 gaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttctt 527  Q
    ||||||||||||||||||| ||||||||||||||||| | |||||||||| | |||||||||||||| |  ||  ||||||||||||||||    
T  26653757 gaagatattgctcaatagactcaaatccaactagctcagcaactctcaagcatataacaaatgagagcatgtttgtatccaaatccttctt 26653667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 258 - 503
Target Start/End: Complemental strand, 19858860 - 19858615
Alignment:
Q  258 ccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagca 357  Q
    ||||||| ||||||||| |||| ||| | |||| ||||||||||||||| ||| | ||||||||| || | | ||||||||| |||||||||||||||||    
T  19858860 ccaccactttgcataacatgtgataatatcggcctcaaaaaatctagattgaaagtataaacttgtatcataaaagggtctggagtaatttttccaagca 19858761  T
Q  358 atggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaat 457  Q
    |||  || |   ||||||||||||| |||| || | |||||||||||||| | |  |||||||||||||||||||||||| ||||||||||| ||| | |    
T  19858760 atgacttgagattcattgaatctagacacataaccaggaacatcttgatcaaattcaaattgcatagcaactctatgtggtagatattgctctataaact 19858661  T
Q  458 caaatccaactagctcggaaactctcaaggacataacaaatgagag 503  Q
    |||| ||||||||||| |||||||||||  | |||| |||||||||    
T  19858660 caaacccaactagctcagaaactctcaaacatataataaatgagag 19858615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 333 - 502
Target Start/End: Complemental strand, 19839106 - 19838937
Alignment:
Q  333 gggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactcta 432  Q
    ||||||||| || |||||||||||||||  || | || ||||||| |||| |||| || |||||||||||||||||||||  ||||||||||||||||||    
T  19839106 gggtctgcaatagtttttccaagcaatgtatttagtcacattgaacctagccacataacctggaacatcttgatccattccgaattgcatagcaactcta 19839007  T
Q  433 tgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgaga 502  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||| | | | |||||||||||||    
T  19839006 tgtggaagatattgctctatagactcaaatccaacaagctcggaaactctaaggcatataacaaatgaga 19838937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 256 - 527
Target Start/End: Complemental strand, 19819350 - 19819079
Alignment:
Q  256 ttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaag 355  Q
    ||||||||| |||||||||||||||||||| | || ||||| ||||| | |||||   | ||  ||  || |||||  || |||||||| ||||||||||    
T  19819350 ttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttccaag 19819251  T
Q  356 caatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaataga 455  Q
    |||||  || | |||||||||| |||| |||| || | |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| || ||    
T  19819250 caatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaaactgcatagcaactctatgtggaagatattgctctatgga 19819151  T
Q  456 atcaaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttctt 527  Q
     ||||| ||||| ||||| |||||||||||  | ||||||||||||||||  ||  ||||||||||| ||||    
T  19819150 ctcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaatttttgtatccaaatccatctt 19819079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 343 - 503
Target Start/End: Original strand, 20015616 - 20015776
Alignment:
Q  343 taatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagat 442  Q
    |||| |||||||||| || ||| | ||||||||||||||||||||  | ||||||||||||||||||||| |||||||||||||||||| ||||| | ||    
T  20015616 taatatttccaagcagtgattttagtctcattgaatctaggcacatcacctggaacatcttgatccattccaaattgcatagcaactctgtgtggcaaat 20015715  T
Q  443 attgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagag 503  Q
    | ||||| ||||| ||||||||||| |||||||||||||| ||| | ||||||||||||||    
T  20015716 actgctctatagagtcaaatccaacaagctcggaaactcttaagcatataacaaatgagag 20015776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 256 - 503
Target Start/End: Complemental strand, 26647794 - 26647547
Alignment:
Q  256 ttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaag 355  Q
    ||||||||| |||||||||| || |||||| | || ||||||||||| ||||| |   | |||||   || ||||| | |||| ||||| ||||||||||    
T  26647794 ttccaccaccttgcataacgggtagtaacatctgcctcaaaaaatctcgatgggaaatacaaactcctatcagatatgcgtctacagtagtttttccaag 26647695  T
Q  356 caatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaataga 455  Q
    |||||  || | |||||||||||| |||||||  |   ||||||||||||||||||| |||||||||||||||||||||||| ||||| || || |||||    
T  26647694 caatgtctttagtctcattgaatcgaggcacatcactcggaacatcttgatccattccaaattgcatagcaactctatgtggcagatactgttctataga 26647595  T
Q  456 atcaaatccaactagctcggaaactctcaaggacataacaaatgagag 503  Q
     || |||||||| ||||| |||||||||||| | ||||||||||||||    
T  26647594 gtcgaatccaacaagctcagaaactctcaagcatataacaaatgagag 26647547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 255 - 505
Target Start/End: Complemental strand, 19832661 - 19832411
Alignment:
Q  255 cttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaa 354  Q
    |||||||||| |||||||||||||||||||| | || ||||| ||||| | |||||   | ||  ||  || |||||  || |||||||| |||||||||    
T  19832661 cttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttccaa 19832562  T
Q  355 gcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatag 454  Q
    ||||||  || | |||||||||| |||| |||| || | |||||||||||||| |||| ||  |||||||||||||||||||||||||||||||| || |    
T  19832561 gcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaatctgcatagcaactctatgtggaagatattgctctatgg 19832462  T
Q  455 aatcaaatccaactagctcggaaactctcaaggacataacaaatgagagaa 505  Q
    | ||||| ||||| ||||| |||||||||||  | ||||||||||||||||    
T  19832461 actcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaa 19832411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 258 - 486
Target Start/End: Complemental strand, 19854288 - 19854060
Alignment:
Q  258 ccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagca 357  Q
    ||||||| || ||||||  ||||||||||| || | |||| | ||||||||||   ||||||||| || |||||||||||||  |||||||||||| |||    
T  19854288 ccaccacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgca 19854189  T
Q  358 atggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaat 457  Q
    |||  || | ||||||||| ||| | |||| || | |||||||||||||| | || ||||||| |||||||||||||||| ||||||||||| ||| | |    
T  19854188 atgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaact 19854089  T
Q  458 caaatccaactagctcggaaactctcaag 486  Q
    |||| ||||||||||| ||||||||||||    
T  19854088 caaacccaactagctcagaaactctcaag 19854060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 548 - 730
Target Start/End: Original strand, 24839564 - 24839740
Alignment:
Q  548 ccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatcctt 647  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||  |    
T  24839564 ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat 24839663  T
Q  648 agccgaatccaatgccaacctcacagtcacactgtcaactttcaagggcttaaccatattccacctcaacagtacatggtctc 730  Q
      | || || ||||||||||      ||||| |||||| |||||||| ||||||  ||| ||||||||||| |||||||||||    
T  24839664 gactgagtctaatgccaacc------tcacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctc 24839740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 548 - 766
Target Start/End: Complemental strand, 19944245 - 19944033
Alignment:
Q  548 ccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatcctt 647  Q
    ||||||| || |||| |||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||| ||||| |||| ||||||||   |    
T  19944245 ccaaatcttttttaaatggtaccaaagtttcatcatttggataatatactccacacttatcagcatattgaacataaggacggcaaataaaatcattgat 19944146  T
Q  648 agccgaatccaatgccaacctcacagtcacactgtcaactttcaagggcttaaccatattccacctcaacagtacatggtctccattttttatcgacttg 747  Q
    ||| ||||| ||||||||||       |||| |||||| |||||||| ||||||  ||| ||||||||||| ||||||||||||||| || ||| ||||     
T  19944145 agctgaatctaatgccaacc------ccacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctccattattgatcaacttt 19944052  T
Q  748 ggttttggttgcaagtttt 766  Q
    |||| ||| ||||| ||||    
T  19944051 ggttgtggctgcaaatttt 19944033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 327 - 500
Target Start/End: Complemental strand, 19951843 - 19951670
Alignment:
Q  327 agataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagca 426  Q
    ||||| ||| |||||||| ||||||||||||||   || | | | |||||| ||||||||| ||   ||||||||||||||||||  |||||||||||||    
T  19951843 agatatgggcctgcagtagtttttccaagcaatcactttagttttattgaacctaggcacataactcggaacatcttgatccattgcaaattgcatagca 19951744  T
Q  427 actctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatga 500  Q
    ||||||||||||||||||||||| ||||| || |  ||||||||||| |||||||||||| | |||||||||||    
T  19951743 actctatgtggaagatattgctctatagagtcgataccaactagctcagaaactctcaagcatataacaaatga 19951670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 394 - 502
Target Start/End: Original strand, 20036069 - 20036177
Alignment:
Q  394 ggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataa 493  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||| | ||||    
T  20036069 ggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaaccagctcagaaaccctcaagcatataa 20036168  T
Q  494 caaatgaga 502  Q
    |||||||||    
T  20036169 caaatgaga 20036177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 372 - 521
Target Start/End: Complemental strand, 19812957 - 19812808
Alignment:
Q  372 attgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagc 471  Q
    |||||| ||||||||| ||  ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| || |  |||||||||    
T  19812957 attgaacctaggcacataacttggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagagtcgataccaactagc 19812858  T
Q  472 tcggaaactctcaaggacataacaaatgagagaacattgttatccaaatc 521  Q
    || |||  ||||||| | |||||||||||||| |  |||||||| |||||    
T  19812857 tcagaacatctcaagcatataacaaatgagagcattttgttatctaaatc 19812808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 545 - 718
Target Start/End: Complemental strand, 19956618 - 19956451
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||| |  ||||| |||| || |||| |||||||||||||||||||||| |||||    
T  19956618 tatccaaatccttcttaaatggtaccaaaatttcatcatttggataaaatagcccacatttatgagaatatcgaacatatggacgccaaagaaagtcatc 19956519  T
Q  645 cttagccgaatccaatgccaacctcacagtcacactgtcaactttcaagggcttaaccatattccacctcaaca 718  Q
    | ||||||| || ||||||| ||      | ||| |||||||| |||||||||||||| ||| |||||| ||||    
T  19956518 catagccgagtctaatgccatcc------taacattgtcaactatcaagggcttaaccttatgccacctaaaca 19956451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 394 - 503
Target Start/End: Complemental strand, 19944369 - 19944260
Alignment:
Q  394 ggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataa 493  Q
    |||||||||||||| | ||  ||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||||||||||||||||||| | ||||    
T  19944369 ggaacatcttgatcaaatccgaattgcatagcaactctatatggtagatattgttctatagactcaaatccaactagctcggaaactctcaagaatataa 19944270  T
Q  494 caaatgagag 503  Q
    ||||||||||    
T  19944269 caaatgagag 19944260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 545 - 653
Target Start/End: Complemental strand, 19838927 - 19838819
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    |||| |||||| |||||| |||||||||| ||||||| ||||||||||||| | |||||||||||| |||| |||||||||||||||||||||| |||||    
T  19838927 tatctaaatccctcttaaatggtaccaaaatttcatcatttggataaaacagttcacacttatcagaatatcgaacatatggacgccaaagaaagtcatc 19838828  T
Q  645 cttagccga 653  Q
    | |||||||    
T  19838827 catagccga 19838819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 368 - 500
Target Start/End: Original strand, 20033774 - 20033906
Alignment:
Q  368 tctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaac 467  Q
    |||| ||||| ||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |  |||||    
T  20033774 tctcgttgaacctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctctatagagtcgataccaac 20033873  T
Q  468 tagctcggaaactctcaaggacataacaaatga 500  Q
    | |||| || ||||||| | | |||||||||||    
T  20033874 ttgctcagacactctcatgcatataacaaatga 20033906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 545 - 664
Target Start/End: Complemental strand, 19819094 - 19818975
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    ||||||||||| |||||| |||||||||| || |||| || ||||||||||   |||||||||||| |||| |||||||||||||||||||||| |||||    
T  19819094 tatccaaatccatcttaaatggtaccaaaattccatcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatc 19818995  T
Q  645 cttagccgaatccaatgcca 664  Q
    ||||||||| || |||||||    
T  19818994 cttagccgagtctaatgcca 19818975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 545 - 664
Target Start/End: Original strand, 20036187 - 20036306
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    ||||||||| |||| ||| |||||||||||||||||| |||||||||| || | || ||||||||| |||| |||||||||||||||||||||| |||||    
T  20036187 tatccaaatacttcgtaaatggtaccaaagtttcatcatttggataaagcagttcaaacttatcagaatatcgaacatatggacgccaaagaaagtcatc 20036286  T
Q  645 cttagccgaatccaatgcca 664  Q
    | ||||||| || |||||||    
T  20036287 catagccgagtctaatgcca 20036306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 545 - 672
Target Start/End: Complemental strand, 26653682 - 26653555
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    |||||||||||||||||| ||||||| || ||||||  ||||||||||||||||||||||| | || ||||  |||||||||||||||||||||||||||    
T  26653682 tatccaaatccttcttaaatggtacccaaatttcattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaatcatc 26653583  T
Q  645 cttagccgaatccaatgccaacctcaca 672  Q
      | || || || |||||||||||||||    
T  26653582 aattgctgagtctaatgccaacctcaca 26653555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 545 - 644
Target Start/End: Complemental strand, 17115247 - 17115148
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    |||||||||| || || | |||||||||| ||||||| |||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||    
T  17115247 tatccaaatcttttttgaatggtaccaaaatttcatcatttggataaaacattccacacttatcagcatatctaatgtatggacgccaaagaaaatcatc 17115148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 545 - 664
Target Start/End: Complemental strand, 19832403 - 19832284
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    ||||||||||| |||||| |||||||||| || |||| || ||||||||||   |||||||||||| |||| |||||||||||||||||||||| |||||    
T  19832403 tatccaaatccatcttaaatggtaccaaaattccatcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatc 19832304  T
Q  645 cttagccgaatccaatgcca 664  Q
    ||||||| | || |||||||    
T  19832303 cttagccaagtctaatgcca 19832284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 548 - 644
Target Start/End: Complemental strand, 26647532 - 26647436
Alignment:
Q  548 ccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    ||||||| ||||||| ||||||| || ||||||| ||||||||||||| | |||||||||||||||||  |||||| ||||||||||||||||||||    
T  26647532 ccaaatctttcttaaatggtaccgaaatttcatcatttggataaaacaattcacacttatcagcatatctaacataaggacgccaaagaaaatcatc 26647436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 548 - 672
Target Start/End: Complemental strand, 26652246 - 26652122
Alignment:
Q  548 ccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatcctt 647  Q
    ||||||| ||||||| ||||||||||||| | || ||||||||||||| | |||||||||| |||||  ||||||| |||||||||| ||||||||   |    
T  26652246 ccaaatctttcttaaatggtaccaaagttccgtcatttggataaaacacttcacacttatctgcataccgaacataaggacgccaaataaaatcattgat 26652147  T
Q  648 agccgaatccaatgccaacctcaca 672  Q
    ||| ||||| |||||||||||||||    
T  26652146 agctgaatctaatgccaacctcaca 26652122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 545 - 644
Target Start/End: Complemental strand, 20046654 - 20046555
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    |||||||||||||||||| ||||||| || |||| |  ||||||||||| ||||||||||| |||| ||||  |||||||||||||||||||||||||||    
T  20046654 tatccaaatccttcttaaatggtacccaaatttcgttatttggataaaaaattccacacttgtcaggatatctaacatatggacgccaaagaaaatcatc 20046555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 548 - 642
Target Start/End: Complemental strand, 19951652 - 19951558
Alignment:
Q  548 ccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatca 642  Q
    ||||||| ||||||| ||| |||||| |||| || || ||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  19951652 ccaaatctttcttaaatggcaccaaaatttcttcattcggataaaacattccacacttatcagcatatctaacatatggacgccaaataaaatca 19951558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 527
Target Start/End: Complemental strand, 20046772 - 20046639
Alignment:
Q  394 ggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataa 493  Q
    ||||||||||| || | || ||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||| | | |||     
T  20046772 ggaacatcttggtcaagtccaaattgcatagaaactctatgtggaagatactgctctatagactcaaatccaacaagctcagaaactctcaggcatatag 20046673  T
Q  494 caaatgagagaacattgttatccaaatccttctt 527  Q
     |||||| || |  || |||||||||||||||||    
T  20046672 aaaatgaaagtatttttttatccaaatccttctt 20046639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 333 - 485
Target Start/End: Complemental strand, 19849709 - 19849557
Alignment:
Q  333 gggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactcta 432  Q
    ||||||||| || |||| ||||||||||  || | | ||||| || || |||||| ||  ||||||||||||||||||||  ||||||| ||  ||||||    
T  19849709 gggtctgcaatagttttgccaagcaatgtctttagtatcatttaacctcggcacataacttggaacatcttgatccattccgaattgcaaagagactcta 19849610  T
Q  433 tgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaa 485  Q
    ||||| ||||||||||| ||||| ||||||||||  ||||| |||||||||||    
T  19849609 tgtgggagatattgctctatagactcaaatccaatgagctcagaaactctcaa 19849557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 578 - 668
Target Start/End: Complemental strand, 19849497 - 19849407
Alignment:
Q  578 catcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatccttagccgaatccaatgccaacct 668  Q
    |||| |||||||||||||||||| | |||| |||||||  | |||||||||||||||||||||||||| ||||||| || |||||||||||    
T  19849497 catcatttggataaaacattccataattatgagcatatctagcatatggacgccaaagaaaatcatccatagccgagtctaatgccaacct 19849407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 254 - 484
Target Start/End: Complemental strand, 19990317 - 19990087
Alignment:
Q  254 tcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttg--cattagataagggtctgcagtaatttttc 351  Q
    |||||||||||  ||||||||| ||||||||| | || ||||| || || |||||||  |||| || ||  ||| ||||| ||| |||  ||| |||| |    
T  19990317 tcttccaccactctgcataacgagtggtaacatctgcctcaaacaacctcgatggaa--aatacacatgttcatcagatatgggcctgttgtagttttcc 19990220  T
Q  352 caagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaa 451  Q
    |||||||  | |||| |||||||||| ||||||||  ||  ||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||  | |    
T  19990219 caagcaacagattcagtctcattgaacctaggcacgtaacttggaatatcttgatccattccaaattgcaaagcaactctatgtgggagatattgaacta 19990120  T
Q  452 tagaatcaaatccaactagctcggaaactctca 484  Q
     | | |||| |||||| ||||| ||||||||||    
T  19990119 caaagtcaattccaacaagctcagaaactctca 19990087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 564 - 645
Target Start/End: Complemental strand, 19812798 - 19812717
Alignment:
Q  564 tggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatcc 645  Q
    ||||||| || ||||||| ||||||||||||| | |||||||||| ||||||  ||||||||||||||||||||||||||||    
T  19812798 tggtaccgaaatttcatcatttggataaaacaatgcacacttatcggcatatctaacatatggacgccaaagaaaatcatcc 19812717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 19948613 - 19948509
Alignment:
Q  257 tccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagc 356  Q
    |||||||| |||||||||| | ||||| ||| || ||||||||| |||||||||   ||||||||  || ||||||||||||| ||||||||||||||||    
T  19948613 tccaccactttgcataacgcgcggtaataccagcctcaaaaaatttagatggaaaatataaacttctatcagataagggtctggagtaatttttccaagc 19948514  T
Q  357 aatgg 361  Q
    |||||    
T  19948513 aatgg 19948509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 644
Target Start/End: Original strand, 20015785 - 20015884
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatat-tgaacatatggacgccaaagaaaatcat 643  Q
    |||||||||| ||||||| |||||| |||  | |||| |||||||||||||   ||||||||||||||||| |||| |||||||||||||||||||||||    
T  20015785 tatccaaatctttcttaaatggtacaaaaaatgcatcatttggataaaacaaatcacacttatcagcatatctgaa-atatggacgccaaagaaaatcat 20015883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 645
Target Start/End: Complemental strand, 19854028 - 19853931
Alignment:
Q  548 ccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatcc 645  Q
    ||||||| ||||||| |||||||  | ||||||| || || ||||||||||||||||||| ||||||   |||||| |||||||||| ||||||||||    
T  19854028 ccaaatcgttcttaaatggtacccgaatttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatcc 19853931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 718
Target Start/End: Complemental strand, 19858565 - 19858436
Alignment:
Q  583 tttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatccttagccgaatccaatgccaacctcacagtcacactgt 682  Q
    ||||||||||||| |||||||||||| ||||||  ||| || |||||||||| |||||||||  ||||||| || |||||||||       | ||| |||    
T  19858565 tttggataaaacagtccacacttatctgcatatctaacgtaaggacgccaaataaaatcatcaatagccgagtctaatgccaac------ttaacattgt 19858472  T
Q  683 caactttcaagggcttaaccatattccacctcaaca 718  Q
    |||||||||||| ||||||| ||| |||||| ||||    
T  19858471 caactttcaaggccttaaccttatgccacctaaaca 19858436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 567 - 640
Target Start/End: Complemental strand, 19990040 - 19989967
Alignment:
Q  567 taccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaat 640  Q
    |||| ||||| |||| ||||||||||||| | ||||||| |||||| ||  |||||||||||||||||||||||    
T  19990040 tacccaagttccatcatttggataaaacagttcacacttctcagcaaatctaacatatggacgccaaagaaaat 19989967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 20033924 - 20033991
Alignment:
Q  548 ccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatat 615  Q
    ||||||| ||||||| ||||||  || ||||||| || |||||||||| || ||||||||||||||||    
T  20033924 ccaaatcattcttaaatggtactgaaatttcatcattcggataaaacagtctacacttatcagcatat 20033991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 327 - 500
Target Start/End: Complemental strand, 1717939 - 1717766
Alignment:
Q  327 agataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagca 426  Q
    ||||| ||| |||||||| | |||||||||||||| || |  |||||||||||||||||||  |  |||||||||||||||||||| |||||||||||||    
T  1717939 agatatgggcctgcagtagtgtttccaagcaatggatttagcctcattgaatctaggcacatcacttggaacatcttgatccattccaaattgcatagca 1717840  T
Q  427 actctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatga 500  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||| || || || ||||||||| | |||||||||||    
T  1717839 actctatgtggcagatactgctctatagagtcaaatccaacaagttcagatactctcaagcatataacaaatga 1717766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 548 - 644
Target Start/End: Complemental strand, 1717748 - 1717652
Alignment:
Q  548 ccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcatc 644  Q
    ||||||| ||||||| |||||||||| ||||||| | ||||||||||||||||| |||||||||||||  ||||||||||||||||| |||||||||    
T  1717748 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatc 1717652  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 643
Target Start/End: Complemental strand, 38483507 - 38483409
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatcat 643  Q
    |||||||||  |||||||  |||||||||  | |||| ||| |||||||||  |||||||||||| |||||  || |||||||||| ||||||||||||    
T  38483507 tatccaaatatttcttaaacggtaccaaaagtgcatcattttgataaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 38483409  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 396 - 503
Target Start/End: Complemental strand, 38483621 - 38483516
Alignment:
Q  396 aacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataaca 495  Q
    |||||||| |||||| | |||||||||||||||||||||   ||  || ||||| ||||  ||||||| ||| |||||  ||||||||||| | ||||||    
T  38483621 aacatcttaatccataccaaattgcatagcaactctatgacaaa--tactgctctatagtctcaaatctaacaagctcaaaaactctcaagcatataaca 38483524  T
Q  496 aatgagag 503  Q
    ||||||||    
T  38483523 aatgagag 38483516  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 643
Target Start/End: Original strand, 12495575 - 12495677
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaaaca----ttccacacttatcagcatattgaacatatggacgccaaagaaaat 640  Q
    |||||||||||||||||| ||||||| || ||||||  ||||||||||| |    |||||||||| |||| ||||  | |||||||||||||||||||||    
T  12495575 tatccaaatccttcttaaatggtacccaaatttcattatttggataaaaaaaaaattccacacttctcaggatatctagcatatggacgccaaagaaaat 12495674  T
Q  641 cat 643  Q
    |||    
T  12495675 cat 12495677  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 643
Target Start/End: Original strand, 12519379 - 12519478
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggat--aaaacattccacacttatcagcatattgaacatatggacgccaaagaaaatca 642  Q
    |||||||||||||||||| ||||||| || ||||||  |||||||  |||| ||||||||||| |||| ||||  | |||||||||| ||||||||||||    
T  12519379 tatccaaatccttcttaaatggtacccaaatttcattatttggataaaaaaaattccacacttctcaggatatctagcatatggacg-caaagaaaatca 12519477  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 643
Target Start/End: Original strand, 12579673 - 12579773
Alignment:
Q  545 tatccaaatccttcttaagtggtaccaaagtttcatcctttggataaa--acattccacacttatcagcatattgaacatatggacgccaaagaaaatca 642  Q
    |||||||||||||||||| ||||||| || ||||||  ||||||||||  | ||||||||||| | || ||||  | |||||||||| ||||||||||||    
T  12579673 tatccaaatccttcttaaatggtacccaaatttcattatttggataaaagaaattccacacttcttaggatatctagcatatggacgtcaaagaaaatca 12579772  T
Q  643 t 643  Q
    |    
T  12579773 t 12579773  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 485
Target Start/End: Complemental strand, 12581911 - 12581822
Alignment:
Q  396 aacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaa 485  Q
    |||||||||||| |||| ||||||||||  |||| ||||| ||||| || |||| ||| | ||||||||||  ||||  |||||||||||    
T  12581911 aacatcttgatcaattccaaattgcataaaaactgtatgtcgaagacatagctctatatactcaaatccaataagcttagaaactctcaa 12581822  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 547 - 640
Target Start/End: Original strand, 6397323 - 6397418
Alignment:
Q  547 tccaaatccttcttaagtggtaccaaagtttcatcctttggataaaac--attccacacttatcagcatattgaacatatggacgccaaagaaaat 640  Q
    |||||||||||||||| |||||||||  |||| |  |||||||||||   ||||||||||| |||| ||||  |||||||||||||||||||||||    
T  6397323 tccaaatccttcttaaatggtaccaagatttcgttatttggataaaaagaattccacacttctcaggatatctaacatatggacgccaaagaaaat 6397418  T

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