View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_low_21 (Length: 314)
Name: NF21294_low_21
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 4317469 - 4317169
Alignment:
| Q |
13 |
aatatccggttgttatgtgtttttcttgtttgagtttgttacatagtaattatatcccttggggtgggattcatactccatctagtctttgattataagc |
112 |
Q |
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| T |
4317469 |
aatatccggttgttacgtgtttttcttgtttgagtttgttacatagtaattatatctcttgaggtgggattcatactccatctagtctttgattataatc |
4317370 |
T |
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| Q |
113 |
aaaattaataaactttacatttatctaaaattttactaaagtaattttcatttnnnnnnnnngtctatatatttgaaagtgtcttttgtaaggnnnnnnn |
212 |
Q |
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| T |
4317369 |
aaaattaataaactttacatttatctaaaattttactaaagtaattttcattt-aaaaaaaagtgtatatatttgaaagtgtcttttgtgaggaaaaaaa |
4317271 |
T |
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| Q |
213 |
ttattcaatgagaataaagagtaattgaaaattaannnnnnnggtcaaaacaaattggaattaacttttatattaattgtaaagtatatgacattaataa |
312 |
Q |
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| T |
4317270 |
ttattcaatgagaataaagagtaattgaaaattaatttttttggtcaaaaaaaattggaattaaattttatattaattgtaaagtatatgacattaataa |
4317171 |
T |
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| Q |
313 |
tc |
314 |
Q |
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| T |
4317170 |
tc |
4317169 |
T |
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