View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21294_low_23 (Length: 264)

Name: NF21294_low_23

Description: NF21294

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21294_low_23

[»] chr6 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 164; E-Value: 1e-87

Query Start/End: Original strand, 14 - 251

Target Start/End: Original strand, 5015510 - 5015746

Alignment:

Q	14	ttaatttcttttcaaaaagttatttttattacaataaacaaacacaacatttctgattgttttaaaaaactacatacattttttactcaataatctctaa	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5015510	ttaatttcttttcaaaaagttatttttattacaataaacaaacacaacatttctgattgttttaaaaaactacatacattttttactcaataatctctaa	5015609	T

Q	114	agattattatttaaaactctcttagatgaaaagnnnnnnncttgc-nnnnnnnnngtttaggtgaattggattttcttaataacatttacagcgcggtac	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	5015610	agattattatttaaaactctcctagatgaaaagtttttttcttgcaaaaaaaaaaatttaggtgaattggattttcttaataacatttaca--gcggtac	5015707	T

Q	213	atacaaatctctcattttatatcatcaggagttgaacct	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5015708	atacaaatctctcattttatatcatcaggagttgaacct	5015746	T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 30; E-Value: 0.00000009

Query Start/End: Original strand, 27 - 60

Target Start/End: Original strand, 33489438 - 33489471

Alignment:

Q	27	aaaaagttatttttattacaataaacaaacacaa	60	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33489438	aaaaagtgatttttattacaataaacaaacacaa	33489471	T

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