View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_low_32 (Length: 201)
Name: NF21294_low_32
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 30193100 - 30192930
Alignment:
| Q |
15 |
aatattaatggaattatatattaattttgtcatagaaacgatattatatattaagttcaaaattaatgaaattaaacaaaatattatgttcactttcata |
114 |
Q |
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| T |
30193100 |
aatattaatggaattatatattaattttgtcatagaaacgatattatatattaagttcaaaattaatgaaattaaacaaaatattatgttcactttcata |
30193001 |
T |
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| Q |
115 |
cataccgttttccaatatttaatcagagaaatcacactcgttagagatttgctttggacattgcaaaaatg |
185 |
Q |
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| T |
30193000 |
cataccgttttccaatatttaatcagagaaatcacactcgttagagatttgctttggacattgcaaaaatg |
30192930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 27663241 - 27663313
Alignment:
| Q |
109 |
ttcatacataccgttttccaatatttaatcagagaaatcacactcgttagagatttgctttggacattgcaaa |
181 |
Q |
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| T |
27663241 |
ttcatacatacctttttcccatatttaatcaaagaaattacactcgtcggagatttgttttggacattacaaa |
27663313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 30834295 - 30834259
Alignment:
| Q |
129 |
atatttaatcagagaaatcacactcgttagagatttg |
165 |
Q |
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| T |
30834295 |
atatttaatcaaagaaatcacactcgttagagatttg |
30834259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 12099837 - 12099890
Alignment:
| Q |
129 |
atatttaatcagagaaatcacactcgttagagatttgctttggacattgcaaaa |
182 |
Q |
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| T |
12099837 |
atatttaatcaaagaaatcacacccgtcacagatttgttgtggacattgcaaaa |
12099890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 14685569 - 14685617
Alignment:
| Q |
129 |
atatttaatcagagaaatcacactcgttagagatttgctttggacattg |
177 |
Q |
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||||||||||| ||||||||||||||| ||| ||| | ||||||||||| |
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| T |
14685569 |
atatttaatcaaagaaatcacactcgtcagaaattagttttggacattg |
14685617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 17662561 - 17662513
Alignment:
| Q |
129 |
atatttaatcagagaaatcacactcgttagagatttgctttggacattg |
177 |
Q |
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||||||||||| ||||||||||||||| ||| ||| | ||||||||||| |
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| T |
17662561 |
atatttaatcaaagaaatcacactcgtcagaaattagttttggacattg |
17662513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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