View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_low_4 (Length: 645)
Name: NF21294_low_4
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_4 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 69 - 630
Target Start/End: Original strand, 26885 - 27438
Alignment:
| Q |
69 |
tttaccttttcaacttcagctataatccaaattcatcaaattaagtgaatttgtaatattcttagttacatgaataatagaatattaatacttacttttg |
168 |
Q |
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| T |
26885 |
tttacctttttaacttcagctataatccaaattcatcaaattaagtgaatttgtaatattcttagttacatgaat--------attaatacttacttttg |
26976 |
T |
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| Q |
169 |
gtacaaattaaagattcgccattccagttatagtttgcattgcaaagacacctctttcctttactacaggtagaatgtttccagccatggcaatcaacag |
268 |
Q |
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| T |
26977 |
gtacaatttaaagattcgccattccagttatagtttgcattgcaaagacacctctttcctttactacaagtagaatggttccagccatggcaatcaacag |
27076 |
T |
|
| Q |
269 |
agttattacagatgggttcggaaggtggttcccaactaactacaagttgttcagagcacgtatcgtcactggtcatgcgaaacggtaaagaaacgttcag |
368 |
Q |
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| T |
27077 |
agttattacagatgggttcggaaggtggttcccaactaacttcaagttgttcagagcacgtattgtcactggtcatgcgaaacggtaaagaaacgttcag |
27176 |
T |
|
| Q |
369 |
acttcctgtccgtttagatccttcatcacaactagtaaaggaataatcctgattttgaagggtaaactttcttctactttgatcaacacgaatgactctg |
468 |
Q |
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| T |
27177 |
acttcctgtccgtttagatccttcatcacaactagtaaaggaataatcctcattatgaagggtaagctttcttctactttgatcaacacgaataactctg |
27276 |
T |
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| Q |
469 |
taactaacgttgttggcggccgtgaagctaaggtgaccttggcccgttgtagtattgcatctaaagttgaagtatgcgaggtctccacagttgggtccgg |
568 |
Q |
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| T |
27277 |
taactaacgttgttagcggccgtgaagctaaggtgaccttggcctgttgtggtattgcatctaaagttgaagtatgcgaggtctccacagttgggtccgg |
27376 |
T |
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| Q |
569 |
tactgagaggataagggactgtgtttgtaccacagggctcacaagttcttggagttggttct |
630 |
Q |
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| T |
27377 |
tactgagaggataagggactgtgtttgtaccacagggctcacaagttcttggagttggttct |
27438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 184 - 627
Target Start/End: Original strand, 1838 - 2278
Alignment:
| Q |
184 |
tcgccattccagttatagtttgcattgcaaagacacctctttcctttactacaggtagaatgtttccagccatggcaatcaacagagttattacagatgg |
283 |
Q |
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| T |
1838 |
tcgccactccatttatactttgcattgcaaagacacttgtttcctttactacaggtagaatgtttccaaccatagaaatcaacaaagttatcacaaacga |
1937 |
T |
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| Q |
284 |
gttcggaaggtggttcccaactaactacaagttgttcagagcacgtatcgtcactggtcatgcgaaacggtaaagaaacgttcagacttcctgtccgttt |
383 |
Q |
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| T |
1938 |
gttcggaaggtggatcccaactaacttccacttgttcagagcatggattgtcattggcaaagtaaaacggtgagaaaaccttcaaattgcctttctattt |
2037 |
T |
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| Q |
384 |
agatccttcatcacaac-tagta--aaggaataatcctgattttgaagggtaaactttcttctactttgatcaacacgaatgactctgtaactaacgttg |
480 |
Q |
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| T |
2038 |
agatccttcagcacaatattgtttgaaagaattatgctcattataaatggtaaatgttcttgaacttgggtctacactaataactttgtaactaacgttg |
2137 |
T |
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| Q |
481 |
ttggcggccgtgaagctaaggtgaccttggcccgttgtagtattgcatctaaagttgaagtatgcgaggtctccacagttgggtccggtactgagaggat |
580 |
Q |
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| T |
2138 |
ttgttggcggtgaagctaagtttacc------cgttgagatgttgcatctaaagttgaagtatgtgaagtctgcacagatgggtctggtattgagaggat |
2231 |
T |
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| Q |
581 |
aagggactgtgtttgtaccacagggctcacaagttcttggagttggt |
627 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2232 |
aagggactgtgtttgtaccacaaggctcacaagttcttggagttggt |
2278 |
T |
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