View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_low_6 (Length: 507)
Name: NF21294_low_6
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Original strand, 14249627 - 14250077
Alignment:
| Q |
13 |
tcatcagtgtgttccactagacctaaagaatgaacaacacgcttcaacatagtctccaatgtttcattctcgtatgtagcaatcaatgttatgttggtaa |
112 |
Q |
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| T |
14249627 |
tcattagtgtgttccactagacctaaagaatgaacaacacgcttcaacatagtctccaatgtttcattctcgtatgtagcaatcaatgttatgttggtaa |
14249726 |
T |
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| Q |
113 |
gaaatgagcatgaggaaattggaatactacttaagaactatatatataatacatgtgatttttgtttcttataaccagctgtacatgtcttgatatcttc |
212 |
Q |
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| T |
14249727 |
gaaatgagcatgaggaaattggaatactacttaagaactatatatataatacatgtgatttttgtttcttataaccagctgtacatgtcttgatatcttc |
14249826 |
T |
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| Q |
213 |
accccccatgagaaaatgatgaatgattcttttttgcttaggaccttgttttgtttctttacggcaaatgttagtgttattaacaatattatggaggtgg |
312 |
Q |
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| T |
14249827 |
accccccatgagaaaatgatgaatgattcttttttgcttaggaccttgttttgtttctttatggcaaatgttagtgttattaataatattatggaggtgg |
14249926 |
T |
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| Q |
313 |
tgatcaaactcttaacatctttaattttatcacttcatttcttaacttcattctttctttctaaatgagaacaaaagtactctttgacgtgatataaaaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14249927 |
tgatcaaactcttaacatctttaattttatcacttcacttcttaacttcattctttctttctagatgagaacaaaagtactctttgacgtgatataaaaa |
14250026 |
T |
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| Q |
413 |
agaatccattcttcctcaaaattaacgtcatggtttgatgctttgccaact |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
14250027 |
agaatccattcttcctcaaaattaacgtcatggtttgatgatgtgccaact |
14250077 |
T |
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