View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21294_low_8 (Length: 493)
Name: NF21294_low_8
Description: NF21294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21294_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 9 - 483
Target Start/End: Complemental strand, 34292808 - 34292337
Alignment:
| Q |
9 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292808 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
34292709 |
T |
|
| Q |
109 |
cacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagtattaaaaatagcaaaaaatg |
208 |
Q |
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|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34292708 |
cacctaatatgcaaaaatgggtctatgatgtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagagttaaaaatagcaaaaaatg |
34292609 |
T |
|
| Q |
209 |
ctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaagaagaaaa |
308 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34292608 |
ctttggttgacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaagg-aagaagaaaa |
34292510 |
T |
|
| Q |
309 |
caaatttcaagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtcttgggagaagattataaag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34292509 |
caaatttcaagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtctagggagaagattataaag |
34292410 |
T |
|
| Q |
409 |
aggtcatagagaaactcaaggatgatcaagtcaatatatgattagcatttgtgggatgggcggagtgggaaaaac |
483 |
Q |
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| T |
34292409 |
aggtcatagagaaactcaaggatgatcaagtca--atatgattagcatttgtgggatgggcggagtgggaaaaac |
34292337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 217 - 483
Target Start/End: Complemental strand, 34567148 - 34566885
Alignment:
| Q |
217 |
gacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaagaagaaaacaaatttc |
316 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34567148 |
gacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaa-gaagaaaacaaatttc |
34567050 |
T |
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| Q |
317 |
aagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtcttgggagaagattataaagaggtcata |
416 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34567049 |
aagttatttcataccccaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtctagggagaagattataaagaggtcata |
34566950 |
T |
|
| Q |
417 |
gagaaactcaaggatgatcaagtcaatatatgattagcatttgtgggatgggcggagtgggaaaaac |
483 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
34566949 |
gagaaactcaaggatgatcaagtca--atatgattagcatctgtgggatgggcggagtgggaaaaac |
34566885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 34567319 - 34567147
Alignment:
| Q |
9 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567319 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
34567220 |
T |
|
| Q |
109 |
cacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatga |
181 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||| |
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| T |
34567219 |
cacctaatgtgcaaaaatggctctatgatgtcacaacaattgaaaatgagttgcaaaagtggctctctgatga |
34567147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 34555494 - 34555400
Alignment:
| Q |
204 |
aaatgctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaagga |
298 |
Q |
| |
|
||||| ||||||||| | || ||||||| ||| |||||| |||||||||||| ||||| |||||||| ||||| |||||| ||| ||||||| |
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| T |
34555494 |
aaatgttttggtggaaagtgtccaaatttgacatataattactcattgggaaagcaagcctctaaaagcattgaatatattataaggttgaagga |
34555400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 45 - 483
Target Start/End: Complemental strand, 15896996 - 15896560
Alignment:
| Q |
45 |
aaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattgcacctaatgtgcaaaaatggctctatgaagtgacaa |
144 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| || | |||||||||||| ||| ||||||||| ||| | |||||||||||||| | ||| ||||||| |
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| T |
15896996 |
aaaatgatgaaacaagcattgcaaacaaaggtggacaatgaaagaaggaagggacatgaaattgaacccatcgtgcaaaaatggctatctgatgtgacaa |
15896897 |
T |
|
| Q |
145 |
caattgaagatcagttgcaaaagtggctctctgatgaaaatagtattaaaaatagcaaaaaatgctttggtggacaatgctcaaatttagcatttaatta |
244 |
Q |
| |
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|||||| || ||| |||||| ||| ||||| ||||||||| | |||| || | || ||||| |||||||||||||| ||| || ||||||||||||| |
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| T |
15896896 |
ttattgaaaatgagtggcaaaaatggatctctaatgaaaataatgttaacaagaagaagaaatgttttggtggacaatgttcagatatagcatttaatta |
15896797 |
T |
|
| Q |
245 |
ttcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaagaagaaaacaaatttcaagttatttcataccctaaacctccatt |
344 |
Q |
| |
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|||||||||||| |||| |||||||| | ||| ||||||||||| |||||| | ||| ||||||||||| ||| ||| || ||||||||| || |||| |
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| T |
15896796 |
ctcattgggaaagcaagcaactaaaaggatagaatatattacaagcctgaagg-aggaaaaaaacaaatttaaagatatatcttaccctaaagcttcatt |
15896698 |
T |
|
| Q |
345 |
aacacttggatctacctatacaaaaaatatcaagagcttattgtcttgggagaagattataa-agaggtcatagagaaactcaaggatgatcaagtcaat |
443 |
Q |
| |
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||||||||||||||||| |||||| || |||||||| |||||||| | || || ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
15896697 |
aacacttggatctaccttcacaaaagatgtcaagagcctattgtctagagaaaaaattataacagaggtcatagagaagctcaaggatgatcaagtca-- |
15896600 |
T |
|
| Q |
444 |
atatgattagcatttgtgggatgggcggagtgggaaaaac |
483 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
15896599 |
aaatgattagcatttgtgggatgggcggagtaggaaaaac |
15896560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 129302 - 129386
Alignment:
| Q |
204 |
aaatgctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaa |
288 |
Q |
| |
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||||| ||||||||| | || ||||||| ||| |||||| |||||||||||| ||||| |||||||| |||| ||||||||| |
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| T |
129302 |
aaatgttttggtggaaagtgtccaaatttgacatataattactcattgggaaagcaagcctctaaaagcattgagtatattacaa |
129386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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