View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21295_high_2 (Length: 704)
Name: NF21295_high_2
Description: NF21295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21295_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 4 - 446
Target Start/End: Complemental strand, 28408601 - 28408159
Alignment:
| Q |
4 |
gtagaagcataggagggagatttgtggcttgttagaaaatttattggttatggagatgatgacattgatgaagatattaacccgcctagttgtggtaccg |
103 |
Q |
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| T |
28408601 |
gtagaatcattggagggagacttgtggcttgttagaaaatttattggttatggagatgatgacattgatgaagatattaacccgcctagttgtggtaccg |
28408502 |
T |
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| Q |
104 |
aaagatttgaagtgtataagttggaattggatcttaaaagtggtaagcttatacgtatgttaagacttgatagtttgggtgacaatgttttatttttggg |
203 |
Q |
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| T |
28408501 |
aaagatttgaagtgtataagttggaattggatcttaaaagtggtaagcttatacatatgttaagacttgatagtttgggagacaatgttttatttttggg |
28408402 |
T |
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| Q |
204 |
tgatagtgattctatatctatgtcggcttcgtattttgctaattatctacaaaaggattcaatttattacacagatgatttttacgaagaggatccaatt |
303 |
Q |
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| T |
28408401 |
tgatagtgattctatatctatgtcggcttcgtattttgctaattatctacaaaaggattcaatttattacacagatgatttttacgaagaggatccaatt |
28408302 |
T |
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| Q |
304 |
tcttaccctaatggaccatttgatatgaaaatctttaatgtgaaagatggaggctttagtcaacattgccgttaccaatattggttcacaaggatgccac |
403 |
Q |
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| T |
28408301 |
tcttaccctaatggaccgtttgatatgaaaatctttaatgtgaaagatggaggctttagtcaacattgccgttaccaacattggttcacaaggatgccac |
28408202 |
T |
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| Q |
404 |
cttcactatgggttattccaccatttcggtgggattgatattt |
446 |
Q |
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| T |
28408201 |
cttcactatgggttattccaccatttcggtgggattgatattt |
28408159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 525 - 689
Target Start/End: Complemental strand, 28407960 - 28407783
Alignment:
| Q |
525 |
actagtattgtgaatgtgtgcaacacacatgaaggatatt------------aatgttggttacaatttacagtttatcatcgtgtttaataaatgtcta |
612 |
Q |
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| T |
28407960 |
actagtattgtgaatgtgtgcaacacacatgaaggatattgttgagacaattaacgttggttacaatttacagtttatcatcatgtttaataaatgtcta |
28407861 |
T |
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| Q |
613 |
ttgtgcaattgatcttactagaattatt-ctgcaatatgagtttgtgtttatcttgataatagtgatttgtagaaggt |
689 |
Q |
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| T |
28407860 |
ttgtgcaattgatcttactagaattattactgcaatatgagtttgtgtttatcttgataatagtaatttgtagaaggt |
28407783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 256 - 465
Target Start/End: Complemental strand, 8466956 - 8466747
Alignment:
| Q |
256 |
aaggattcaatttattacacagatgatttttacgaagaggatccaatttcttaccctaatggaccatttgatatgaaaatctttaatgtgaaagatggag |
355 |
Q |
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| T |
8466956 |
aaggattcaatttattacaccgatgattattttgaagaagcactgcatccttaccctaatggaccatttgatatgaaaacctataatgtaaaagatggaa |
8466857 |
T |
|
| Q |
356 |
gctttagtcaacattgccgttaccaatattggttcacaaggatgccaccttcactatgggttattccaccatttcggtgggattgatatttaaacttgaa |
455 |
Q |
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| T |
8466856 |
gctttagtgaccattgccctttcgaacattggttcgcacagatgccaccttcactatgggttcttccaccatatcagtgggaatgatagcttaatttgaa |
8466757 |
T |
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| Q |
456 |
gtatgttact |
465 |
Q |
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| T |
8466756 |
gtatgctact |
8466747 |
T |
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