View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21295_high_3 (Length: 508)
Name: NF21295_high_3
Description: NF21295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21295_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 7382695 - 7382208
Alignment:
| Q |
1 |
tgccaaaaataacaaaaggagtgaaagaaagaaccttctctgacaattctctatacnnnnnnntaatgatgcaactannnnnnnggattattcttgatgg |
100 |
Q |
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| T |
7382695 |
tgccaaaaataacaaaaggagtgaaagaaagaaccttctctgacaattctctatacaaaaaaataatgatgcaactatttttttggattattcttgatgg |
7382596 |
T |
|
| Q |
101 |
ccataatccaaaatcttcattgcatgcaatnnnnnnnccaatcaaagtttcttgcttttgcaagaaagcaacttggccaataataataattaaataaaat |
200 |
Q |
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| T |
7382595 |
ccataatccaaaatcttcattgcatgcaataaaaaaaccaatcaaagtttcttgcttttgcaagaaagcaacttggccaataataataattaaat-aaat |
7382497 |
T |
|
| Q |
201 |
ga-------cagatccaattatgttttagttttttatttgtgacatgaaaatgacagatccaacatgaacatcaaatggatcgaaataacagtaattttt |
293 |
Q |
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| T |
7382496 |
gaattgttgca-actcaattatgttttagttttttatttgtgacatgaaaatgacagatccaacatgaacatcaaatggatcgaaataacagtaattttt |
7382398 |
T |
|
| Q |
294 |
tggtcaaaatgacacgtaactaactttctagtataatattattgtcnnnnnnnnnnnnnnnnnnnctttctggtaatttgttttttctggtaaaatatta |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||| |
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| T |
7382397 |
tggtcaaaatgacacgtaactaactttctagtataatattattgtc---aaaaagaaaaaaacaactttctggtaatttgttttttatggcataatatta |
7382301 |
T |
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| Q |
394 |
ttctcaatgataccaatgatttggtttgagggtttggatttctttttccacttttcaatagaatttactatgagaagatggtaatcagttcat |
486 |
Q |
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| T |
7382300 |
ttctcaatgataccaatgatttggtttgagggtttggatttctttttccacttttcaatagaatttactatgagaagatggtaattagttcat |
7382208 |
T |
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