View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21295_low_1 (Length: 785)

Name: NF21295_low_1
Description: NF21295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21295_low_1
NF21295_low_1
[»] chr7 (6 HSPs)
chr7 (639-770)||(43996611-43996742)
chr7 (390-490)||(22644002-22644104)
chr7 (402-488)||(3632825-3632911)
chr7 (402-490)||(33614224-33614312)
chr7 (413-474)||(40236670-40236730)
chr7 (318-368)||(3632712-3632762)
[»] chr4 (7 HSPs)
chr4 (15-177)||(34412508-34412671)
chr4 (402-490)||(52457511-52457599)
chr4 (390-490)||(34412866-34412967)
chr4 (285-372)||(34412751-34412837)
chr4 (402-490)||(35106077-35106165)
chr4 (318-368)||(35105968-35106018)
chr4 (304-368)||(52457666-52457730)
[»] scaffold0287 (2 HSPs)
scaffold0287 (402-488)||(13174-13260)
scaffold0287 (318-368)||(13323-13373)
[»] chr1 (1 HSPs)
chr1 (402-490)||(38674315-38674404)
[»] chr8 (2 HSPs)
chr8 (426-490)||(22914392-22914457)
chr8 (426-490)||(10405794-10405858)
[»] chr3 (2 HSPs)
chr3 (426-490)||(24695855-24695920)
chr3 (426-490)||(45059197-45059262)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 5e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 639 - 770
Target Start/End: Original strand, 43996611 - 43996742
Alignment:
Q  639 aaagtgagttgagagtgattaagcatttgataggaataaaatgattgtttgannnnnnnnaacatattattgtactgtactaggtgttgaaaccatcact 738  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  43996611 aaagtgagttgagagtgattaagtatttgataggaataaaatgtttgtttgattttttttaacatattattgtactgtactaggtgttgaaaccatcact 43996710  T
Q  739 gacacaaggttgaagatgaacagtgttgtttg 770  Q
    ||||||||||||||||||||||||||||||||    
T  43996711 gacacaaggttgaagatgaacagtgttgtttg 43996742  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 390 - 490
Target Start/End: Complemental strand, 22644104 - 22644002
Alignment:
Q  390 tcaacaatttaa--taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatca 487  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  22644104 tcaacaatttaaattaaaaattggattaagttatttaataaattaatttttattgaaggtttattagttaggggtattttggtacttctaaaaataatca 22644005  T
Q  488 aca 490  Q
    |||    
T  22644004 aca 22644002  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 402 - 488
Target Start/End: Original strand, 3632825 - 3632911
Alignment:
Q  402 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaa 488  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||    
T  3632825 taaaaattgaattaagttatttaataaattaattttgattgaaggtttattaattaggggcattttggtacttctaaaaagaatcaa 3632911  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 402 - 490
Target Start/End: Complemental strand, 33614312 - 33614224
Alignment:
Q  402 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaaca 490  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||  |||||| |||||||||| ||||||||||    
T  33614312 taaaaattggattaaattatttaataaattaattttgattgaaggtttattaattatgggtattttgctacttctaaagataatcaaca 33614224  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 474
Target Start/End: Complemental strand, 40236730 - 40236670
Alignment:
Q  413 ttaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtactt 474  Q
    ||||||||||||| ||||||||||||||||||| ||| ||| || ||| |||||||||||||    
T  40236730 ttaagttatttaaaaaattaattttgattgaagattt-ttaattgggggcattttggtactt 40236670  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 3632712 - 3632762
Alignment:
Q  318 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 368  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||| |||||    
T  3632712 aaaaaatgagttctaatttatttggatgaagtcacaaattaatgaaataat 3632762  T

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Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 34412508 - 34412671
Alignment:
Q  15 caaagggaagttgttgaagacaagttgaaggtatcatatgtcactagtagacga-ctatttttgaagcaaaatagaaaaatagtagtaaatacacttgaa 113  Q
    |||||| ||||| | |||||||||||||||||||||| ||| | | |||||||| | |||||| ||||||||||||||||||| |||||||   ||||||    
T  34412508 caaaggaaagttatagaagacaagttgaaggtatcatttgttagtggtagacgaacaattttttaagcaaaatagaaaaataggagtaaatgaccttgaa 34412607  T
Q  114 agcagtcgtgttgagattggaagagctctttgacacatatgaaatggtgaatgccatatatgga 177  Q
     ||||| |||||||||||||||||  ||| || ||||  |||||||||||||||||||||||||    
T  34412608 ggcagtggtgttgagattggaagaagtctctggcacacgtgaaatggtgaatgccatatatgga 34412671  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 402 - 490
Target Start/End: Complemental strand, 52457599 - 52457511
Alignment:
Q  402 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaaca 490  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||    
T  52457599 taaaaattggattaagttatttaataaattaattttgattgaaggtttattaattaggggtattttggtacttctgaaaataatcaaca 52457511  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 390 - 490
Target Start/End: Original strand, 34412866 - 34412967
Alignment:
Q  390 tcaacaattta--ataaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatca 487  Q
    |||||||||||  ||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||  ||||| |||||| ||||||||||||    
T  34412866 tcaacaatttagaatagaaattggattaagttatttaacaaattaattttgattgaaggtttattaattaggg-tattttcgtacttttaaaaataatca 34412964  T
Q  488 aca 490  Q
    |||    
T  34412965 aca 34412967  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 285 - 372
Target Start/End: Original strand, 34412751 - 34412837
Alignment:
Q  285 ttcttattaataagtagagtttcaataagaaacaaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataatcttc 372  Q
    ||||||||||||||  |||||||||||||||  ||||||||| ||| |||||||||||||||||| |||||||||| | |||||||||    
T  34412751 ttcttattaataagatgagtttcaataagaat-aaaaaatgagttctaatttatttggatgaaattacaaattaattaaataatcttc 34412837  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 402 - 490
Target Start/End: Original strand, 35106077 - 35106165
Alignment:
Q  402 taaaagttggattaagttatttaataaattaattttgattgaagg-tttattagttagggacattttggtacttctaaaaataatcaaca 490  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||| ||||||| ||| ||  |||||||||||| |||||||||||||||    
T  35106077 taaaaattggattaagttatttaataaattaactttgatcgaaggttttatta-ttaagggtattttggtacttttaaaaataatcaaca 35106165  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 35105968 - 35106018
Alignment:
Q  318 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 368  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||| |||||    
T  35105968 aaaaaatgaattctaatttatttggatgaaattacaaattaatgaaataat 35106018  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 52457730 - 52457666
Alignment:
Q  304 tttcaataagaaacaaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 368  Q
    ||||||||||||  ||||| ||| ||| |||||||||||||||| | |||||||||||| |||||    
T  52457730 tttcaataagaataaaaaattgagttctaatttatttggatgaagttacaaattaatgaaataat 52457666  T

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Target: scaffold0287 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 402 - 488
Target Start/End: Complemental strand, 13260 - 13174
Alignment:
Q  402 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaa 488  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||    
T  13260 taaaaattgaattaagttatttaataaattaattttgattgaaggtttattaattaggggcattttggtacttctaaaaagaatcaa 13174  T

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Target: scaffold0287; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 13373 - 13323
Alignment:
Q  318 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 368  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||| |||||    
T  13373 aaaaaatgagttctaatttatttggatgaagtcacaaattaatgaaataat 13323  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 402 - 490
Target Start/End: Complemental strand, 38674404 - 38674315
Alignment:
Q  402 taaaagttggattaagttatttaataaattaa-ttttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaaca 490  Q
    ||||| ||| |||||||||||||||||||||| |||| |||||| |||||||| ||||||  |||||||||||| |||||||||||||||    
T  38674404 taaaaattgaattaagttatttaataaattaagttttcattgaatgtttattaattaggggtattttggtacttttaaaaataatcaaca 38674315  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 426 - 490
Target Start/End: Original strand, 22914392 - 22914457
Alignment:
Q  426 taaattaattttgattgaaggtttattagttagggacattttggtacttcta-aaaataatcaaca 490  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||||| || |||||||||||||    
T  22914392 taaattaattttgattgaaggtttattaattaggggtattttggtacttttacaaaataatcaaca 22914457  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 426 - 490
Target Start/End: Complemental strand, 10405858 - 10405794
Alignment:
Q  426 taaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaaca 490  Q
    |||||||||||||||  |||||||  || | ||||||||||||||||||||||||||||||||||    
T  10405858 taaattaattttgatccaaggttttctattaagggacattttggtacttctaaaaataatcaaca 10405794  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 426 - 490
Target Start/End: Complemental strand, 24695920 - 24695855
Alignment:
Q  426 taaattaattttgattgaaggtttatt-agttagggacattttggtacttctaaaaataatcaaca 490  Q
    |||||||||||||||||||||||| || | | |||| |||||||||||||||||||||||||||||    
T  24695920 taaattaattttgattgaaggtttttttaataaggggcattttggtacttctaaaaataatcaaca 24695855  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 490
Target Start/End: Original strand, 45059197 - 45059262
Alignment:
Q  426 taaattaattttgattgaaggtttatt-agttagggacattttggtacttctaaaaataatcaaca 490  Q
    |||||||||||||||||||| ||| || | | ||||  ||||||||||||||| ||||||||||||    
T  45059197 taaattaattttgattgaagttttttttaataaggggtattttggtacttctagaaataatcaaca 45059262  T

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