View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21295_low_3 (Length: 670)
Name: NF21295_low_3
Description: NF21295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21295_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 19 - 656
Target Start/End: Original strand, 36051716 - 36052353
Alignment:
| Q |
19 |
ttgactatgatacggatatctcaattctggggaaaatccaccaccctgcagctcttgcaaaatgtacaaacctatctgatttccatcttacctctgaagc |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051716 |
ttgacgatgatacggatatctcaattctggggaaaatccaccaccctgcagctcttgcaaaatgtacaaacctatctgatttccatcttacctctgaagc |
36051815 |
T |
|
| Q |
119 |
aactaacacccacctcataggtggcttcgccgttcccccaccgcctccaccaaagccgccagataatgacccatctaagagtaaccctgtgctgttattg |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051816 |
aactaacacccacctcgtaggtggcttcgccgttcccccaccgcctccaccaaagccgccagataatgacccatctaagagtaaccctgtgctgttattg |
36051915 |
T |
|
| Q |
219 |
gcagagtcgacaaaatccagcattgttatgtttgcatcaatcactgacactgaaccatatgacccaggtccatcgaaacatccattcccagccactgtag |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051916 |
gcagagtcaacaaaatccagcattgttatgtttgcatcaatcactgacactgaaccatatgacccaggtccatcgaaacatccattcccagccactgtag |
36052015 |
T |
|
| Q |
319 |
tcacttttatcagtacgacgaacttgtttgataaatttcccaagagggactgtgcttttcatttttgttccagagaggttattactatcaccggcgcaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |
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| T |
36052016 |
tcacttttatcagtacgacgaacttgtttgataaatttcccaagagggactgtgcttttcatttttgttccagagaagttattactatcaccgtcgcgag |
36052115 |
T |
|
| Q |
419 |
gaacatgttcgataaactgcccacgagggatcatgcttttcccagagaggttattactacaaatgatagtttgcaacatattaaccatgctcttgcaaaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052116 |
gaacatgttcgataaactgcccacgagggatcatgcttttcccagagaggttattactacaaatgatagtttgcaacatattaaccatgctcttgcaaaa |
36052215 |
T |
|
| Q |
519 |
gttcacttcttaaatgcaactatcaccacactgtttgggatnnnnnnncttctagaggcacttatcattatgtttaagttgggtgaagctagtgcagtgt |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052216 |
gttcacttcttaaatgcaactatcaccacactgtttgggataaaaaaacttctagaggcacttatcattatgtttaagttgggtgaagctagtgcagtgt |
36052315 |
T |
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| Q |
619 |
ataaactttctcagacaggtttgatcacaattactgat |
656 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36052316 |
ataaactttctcagacaggtttgatcacaattactgat |
36052353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 38270579 - 38270636
Alignment:
| Q |
97 |
atttccatcttacctctgaagcaactaacacccacctcataggtggcttcgccgttcc |
154 |
Q |
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|||||||| || ||||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
38270579 |
atttccattgtatctctgaagcaactaacatccaattcataggtggcttcgccattcc |
38270636 |
T |
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