View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21295_low_5 (Length: 470)

Name: NF21295_low_5
Description: NF21295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21295_low_5
NF21295_low_5
[»] chr1 (9 HSPs)
chr1 (1-292)||(51806377-51806654)
chr1 (324-470)||(51807339-51807485)
chr1 (354-469)||(51771790-51771908)
chr1 (149-269)||(24117065-24117185)
chr1 (149-213)||(18337529-18337593)
chr1 (27-114)||(42947851-42947938)
chr1 (145-193)||(23528710-23528758)
chr1 (150-213)||(16417368-16417431)
chr1 (149-193)||(12003187-12003231)
[»] chr4 (8 HSPs)
chr4 (150-256)||(18459672-18459778)
chr4 (149-256)||(10394568-10394675)
chr4 (176-269)||(7452504-7452597)
chr4 (141-237)||(610573-610669)
chr4 (172-269)||(4156844-4156940)
chr4 (141-202)||(5884466-5884527)
chr4 (174-255)||(46664331-46664412)
chr4 (149-205)||(24719575-24719631)
[»] scaffold0036 (1 HSPs)
scaffold0036 (149-269)||(37118-37237)
[»] chr2 (4 HSPs)
chr2 (145-255)||(5395613-5395723)
chr2 (159-255)||(8428210-8428306)
chr2 (150-205)||(31023282-31023337)
chr2 (209-269)||(19257479-19257539)
[»] scaffold0048 (1 HSPs)
scaffold0048 (149-269)||(61334-61454)
[»] chr7 (5 HSPs)
chr7 (142-213)||(4574563-4574634)
chr7 (141-176)||(4574521-4574556)
chr7 (143-193)||(44944872-44944922)
chr7 (152-269)||(21157725-21157842)
chr7 (153-213)||(26565635-26565695)
[»] chr6 (4 HSPs)
chr6 (145-208)||(4597163-4597226)
chr6 (149-256)||(4841883-4841990)
chr6 (156-266)||(12245174-12245284)
chr6 (141-177)||(1178799-1178835)
[»] chr8 (7 HSPs)
chr8 (149-203)||(15761456-15761510)
chr8 (141-206)||(17788320-17788385)
chr8 (153-232)||(26879169-26879250)
chr8 (145-202)||(1018280-1018337)
chr8 (208-269)||(16751932-16751992)
chr8 (153-194)||(32424394-32424435)
chr8 (149-193)||(3094280-3094324)
[»] chr3 (11 HSPs)
chr3 (200-255)||(3041189-3041244)
chr3 (208-255)||(22970725-22970772)
chr3 (159-213)||(28135790-28135844)
chr3 (149-205)||(10872961-10873017)
chr3 (145-191)||(17796431-17796477)
chr3 (145-191)||(19104871-19104917)
chr3 (215-255)||(15806482-15806522)
chr3 (149-205)||(15806521-15806577)
chr3 (220-256)||(17796605-17796641)
chr3 (220-256)||(19105045-19105081)
chr3 (151-255)||(26234879-26234983)
[»] chr5 (3 HSPs)
chr5 (196-254)||(15445849-15445907)
chr5 (174-243)||(13350037-13350106)
chr5 (208-269)||(4289918-4289979)
[»] scaffold0182 (1 HSPs)
scaffold0182 (208-266)||(24299-24357)
[»] scaffold0684 (1 HSPs)
scaffold0684 (208-269)||(5562-5623)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 51806654 - 51806377
Alignment:
Q  1 ctattctaaaatgagaaattcatcaattcactttatagagtaaaatgagtaatatcaagcgttgataaacaaataaatgattgtgattacgtgcacatgc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  51806654 ctattctaaaatgagaaactcatcaattcactttatagagtaaagtgagtaatatcaaccgttgataaacaaataaatgattgtcattacgtgcaaatgc 51806555  T
Q  101 acaacaaatcatggttataatattcattgt----tgtcaaaatc-ttactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattc 195  Q
    | |||||||||||||||||||||||| |||    | |  |  || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  51806554 ataacaaatcatggttataatattcactgtccagtatttatgtctttactcatcttcaacgattcaaattcattgcagaatcccaaaataggcaaaatcc 51806455  T
Q  196 tagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaagtatggagttaattataattataa 292  Q
    |||||||||||||||||||| |||                   |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51806454 tagtaaaatcacatcaaagttgca-------------------caaaattgcagggttttatgggattttgaagtatggagttaattataattataa 51806377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 324 - 470
Target Start/End: Original strand, 51807339 - 51807485
Alignment:
Q  324 ctctaatagctcaaaccattccctcttcacctagtgctagtcttttcaacaaaacacaaaccttattaatcattcaacatgctgacctcgattaatcatg 423  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51807339 ctctaatagctcaaaccattccctcttcacctattgctagtcttttcaacaaaacacaaaccttattaatcattcaacatgctgacctcaattaatcatg 51807438  T
Q  424 agctagttgttggaactccaatcatatatcatcagtttcaaaattcg 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  51807439 agctagttgttggaactccaatcatatatcatcagtttcaaaattcg 51807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 354 - 469
Target Start/End: Original strand, 51771790 - 51771908
Alignment:
Q  354 ctagtgctagtcttttcaacaaaacacaaaccttatta---atcattcaacatgctgacctcgattaatcatgagctagttgttggaactccaatcatat 450  Q
    ||||||||||||||||||||||||||||||||||| ||   |||||||||||||| || |||  ||  |||||||||||||  |||||||||||||||||    
T  51771790 ctagtgctagtcttttcaacaaaacacaaaccttagtaatcatcattcaacatgcagatctcacttcttcatgagctagtttctggaactccaatcatat 51771889  T
Q  451 atcatcagtttcaaaattc 469  Q
     | ||||||| ||||||||    
T  51771890 ttgatcagttccaaaattc 51771908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 269
Target Start/End: Original strand, 24117065 - 24117185
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 248  Q
    ||||||||||||||||| ||   ||||||| |||| |  |||||| || |||||||||||||||||||||  |||||  ||||| || |||||||| |||    
T  24117065 cttcaacgattcaaatttatattagaatcccaaaacaaacaaaatccttgtaaaatcacatcaaagtcgcgaaaaatggtgaaacccgtgcaaaatcgca 24117164  T
Q  249 ggattttatgggattttgaag 269  Q
    ||||||||   ||||||||||    
T  24117165 ggattttaaatgattttgaag 24117185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 18337593 - 18337529
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 213  Q
    ||||||||| |||||| ||| |||||| || |||||||||||||| ||||||||||| |||||||    
T  18337593 cttcaacgactcaaatccatagcagaaccccaaaataggcaaaatcctagtaaaatcgcatcaaa 18337529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 42947938 - 42947851
Alignment:
Q  27 ttcactttatagagtaaaatgagtaatatcaagcgttgataaacaaataaatgattgtgattacgtgcacatgcacaacaaatcatgg 114  Q
    |||| |||| ||||||||| |||||||||||| ||||||||||||||| |||| |||  ||||  |||| ||| | ||||||||||||    
T  42947938 ttcattttagagagtaaaacgagtaatatcaaccgttgataaacaaatcaatggttgatattatatgcaaatgtaaaacaaatcatgg 42947851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 23528710 - 23528758
Alignment:
Q  145 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaat 193  Q
    ||||||||||||| |||||| ||| | ||||||||||||||||||||||    
T  23528710 tcatcttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 23528758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 16417368 - 16417431
Alignment:
Q  150 ttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 213  Q
    |||||| ||||||||||||| || ||||| |||| || |||| ||||||||||||| |||||||    
T  16417368 ttcaactattcaaattcatttcaaaatcccaaaacagacaaagttctagtaaaatcgcatcaaa 16417431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 12003231 - 12003187
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaat 193  Q
    |||||||||||||||||||| ||| ||||| |||| |||||||||    
T  12003231 cttcaacgattcaaattcatagcaaaatcccaaaacaggcaaaat 12003187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 18459778 - 18459672
Alignment:
Q  150 ttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcag 249  Q
    |||||||| |||||| ||| |||||||||||||||||||||||| |||||||||   ||||||| |||||||||||| |||||| ||| |||||||||||    
T  18459778 ttcaacgactcaaatccatagcagaatcctaaaataggcaaaatcctagtaaaagtccatcaaaatcgcacaaaatcgtgaaattcatacaaaattgcag 18459679  T
Q  250 gatttta 256  Q
    |||||||    
T  18459678 gatttta 18459672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 10394568 - 10394675
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 248  Q
    ||||||||| | |||||||| | |||||  |||||||||||| || || |||||||  ||| ||| |||||||||||||| |||||||| |||||| |||    
T  10394568 cttcaacgacttaaattcatagtagaattttaaaataggcaagatccttgtaaaattgcattaaaatcgcacaaaatcattaaatccattcaaaatcgca 10394667  T
Q  249 ggatttta 256  Q
    ||||||||    
T  10394668 ggatttta 10394675  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 7452504 - 7452597
Alignment:
Q  176 tcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 269  Q
    |||||| ||||||||||| ||| ||||||| | || || |||||||||||| |||||| ||| ||||||||||||||||||  || ||||||||    
T  7452504 tcctaatataggcaaaatcctaataaaatcgcttctaaatcgcacaaaatcgtgaaatacatacaaaattgcaggattttaaagggttttgaag 7452597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 610669 - 610573
Alignment:
Q  141 ttactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccat 237  Q
    |||||| | |||||||||| ||||| ||||||||||  ||||| || |||||| ||| | ||| | ||||||| |||||||||||| ||||||||||    
T  610669 ttactcgttttcaacgattgaaatttattgcagaattttaaaacagacaaaatcctaatgaaaccgcatcaaaatcgcacaaaatcgtgaaatccat 610573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 4156844 - 4156940
Alignment:
Q  172 agaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 269  Q
    |||||||||||||| |||||||  |||||||||| ||||||| || ||| ||||  |||||| ||| |||||| ||| |||||||  |||||||||||    
T  4156844 agaatcctaaaataagcaaaatcttagtaaaatcgcatcaaaatcacac-aaattgtgaaatacatacaaaatcgcaagattttaaaggattttgaag 4156940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 5884527 - 5884466
Alignment:
Q  141 ttactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaa 202  Q
    ||||||| ||||| |||| ||||| ||||||| |||   |||||||||||||||||||||||    
T  5884527 ttactcaccttcatcgatccaaatccattgcaaaatgtaaaaataggcaaaattctagtaaa 5884466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 46664412 - 46664331
Alignment:
Q  174 aatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 255  Q
    ||||| |||| ||||| ||| ||||||||||| ||||||| || ||||||||| | |||||||| |||| ||  ||||||||    
T  46664412 aatcccaaaacaggcataatcctagtaaaatcgcatcaaaatcccacaaaatcctaaaatccatacaaatttaaaggatttt 46664331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 24719575 - 24719631
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatc 205  Q
    ||||||||| |||||| ||| ||||||||||||||| ||  |||| |||||||||||    
T  24719575 cttcaacgactcaaatccatagcagaatcctaaaatgggtgaaatcctagtaaaatc 24719631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 149 - 269
Target Start/End: Complemental strand, 37237 - 37118
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 248  Q
    ||||||| | |||||| ||| |||||||| ||||||||| ||||| ||||||||||| ||||||| || ||||||||| ||||||| |||||||| ||||    
T  37237 cttcaacaactcaaatccatagcagaatcttaaaataggtaaaatcctagtaaaatcgcatcaaaatcacacaaaatcgtgaaatctatgcaaaa-tgca 37139  T
Q  249 ggattttatgggattttgaag 269  Q
     |||||||  || ||||||||    
T  37138 tgattttaaagggttttgaag 37118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 5395723 - 5395613
Alignment:
Q  145 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaat 244  Q
    ||||||| || || |||||| ||| ||||||||  ||||||||||||||  ||||||||   ||||||| || |||||||||||||||| ||  ||||||    
T  5395723 tcatcttaaatgactcaaatccatagcagaatctcaaaataggcaaaatcttagtaaaaatgcatcaaaatctcacaaaatcatgaaattcaaacaaaat 5395624  T
Q  245 tgcaggatttt 255  Q
    |||||||||||    
T  5395623 tgcaggatttt 5395613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 8428210 - 8428306
Alignment:
Q  159 tcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 255  Q
    |||||||||| | |||||| |||||||||||||||  ||||||||||  |||||| ||  ||||||||  ||||| ||| |||||||| ||||||||    
T  8428210 tcaaattcataggagaatcttaaaataggcaaaatcttagtaaaatcgtatcaaaatcctacaaaatcccgaaattcatacaaaattgaaggatttt 8428306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 31023282 - 31023337
Alignment:
Q  150 ttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatc 205  Q
    |||||||| |||||||||| | ||||||||||||||||||||||| || |||||||    
T  31023282 ttcaacgactcaaattcatagtagaatcctaaaataggcaaaattatattaaaatc 31023337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 19257539 - 19257479
Alignment:
Q  209 tcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 269  Q
    ||||| |||||||||||  |||||||||| |||||| |||||||||||  | |||||||||    
T  19257539 tcaaaatcgcacaaaattgtgaaatccattcaaaatcgcaggattttaaagaattttgaag 19257479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 269
Target Start/End: Complemental strand, 61454 - 61334
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 248  Q
    |||||||| ||||||| |||   ||||||| |||||| |||||||| |||||||||  ||||||| |||||||||| | |||||| ||| |||||  |||    
T  61454 cttcaacggttcaaatccatatgagaatcccaaaataagcaaaattatagtaaaattgcatcaaaatcgcacaaaaacgtgaaattcatacaaaaccgca 61355  T
Q  249 ggattttatgggattttgaag 269  Q
    ||||||||  || ||||||||    
T  61354 ggattttaatgggttttgaag 61334  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 4574563 - 4574634
Alignment:
Q  142 tactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 213  Q
    |||||| |||||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||  |||||||    
T  4574563 tactcaccttcaacgattcaaattcattgcagaattccaaaataagcaaaatcctactaaaattgcatcaaa 4574634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 4574521 - 4574556
Alignment:
Q  141 ttactcatcttcaacgattcaaattcattgcagaat 176  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4574521 ttactcaccttcaacgattcaaattcattgcagaat 4574556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 44944922 - 44944872
Alignment:
Q  143 actcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaat 193  Q
    ||||| |||||||||||||||| ||| | ||||||||||||||| ||||||    
T  44944922 actcaccttcaacgattcaaatccatagtagaatcctaaaatagtcaaaat 44944872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 21157842 - 21157725
Alignment:
Q  152 caacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcagga 251  Q
    |||||| |||||| ||| ||| |||||||||| | | |||||  |||||||||| | | ||| | |||||||| | |||||| ||| |||||| |||| |    
T  21157842 caacgactcaaatccatagcaaaatcctaaaacaagaaaaatcgtagtaaaatcgcttaaaaattgcacaaaaccgtgaaattcatacaaaatcgcagaa 21157743  T
Q  252 ttttatgggattttgaag 269  Q
    |||||  |||||||||||    
T  21157742 ttttaaaggattttgaag 21157725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 26565695 - 26565635
Alignment:
Q  153 aacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 213  Q
    |||||||||||||||| ||||||||  |||||| |||| || ||| ||||||| |||||||    
T  26565695 aacgattcaaattcatagcagaatctcaaaatatgcaagatcctactaaaatcgcatcaaa 26565635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 4597226 - 4597163
Alignment:
Q  145 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcaca 208  Q
    ||||||| ||||||||||||||||||||||||   |||||||||||||| ||||||||| ||||    
T  4597226 tcatctttaacgattcaaattcattgcagaatttaaaaataggcaaaatcctagtaaaaccaca 4597163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 4841990 - 4841883
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 248  Q
    ||||||||| |||||| | | ||||||||| | |||||||||||| ||||||||||| | ||||| |||||||||||| ||| || ||| ||| || |||    
T  4841990 cttcaacgactcaaatccgtagcagaatcccataataggcaaaatactagtaaaatcgcttcaaaatcgcacaaaatcgtgagattcatacaagatcgca 4841891  T
Q  249 ggatttta 256  Q
     |||||||    
T  4841890 tgatttta 4841883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 12245174 - 12245284
Alignment:
Q  156 gattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 255  Q
    |||| |||| ||||||| ||||| |||| ||  ||||| |||| |||||  ||||||| ||| | |||||| |||||  |||||||||||| ||||||||    
T  12245174 gatttaaatccattgcaaaatcccaaaacagataaaatcctagaaaaatagcatcaaaatcgaataaaatcgtgaaacacatgcaaaattgaaggatttt 12245273  T
Q  256 atgggattttg 266  Q
    |  ||||||||    
T  12245274 acaggattttg 12245284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 1178799 - 1178835
Alignment:
Q  141 ttactcatcttcaacgattcaaattcattgcagaatc 177  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  1178799 ttactcaccttcaacgattcaaatccattgcagaatc 1178835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 15761510 - 15761456
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaa 203  Q
    ||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||    
T  15761510 cttcaacgactcaaattcatagcaaaatcccaaaataggcaaaattctagtaaaa 15761456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 17788385 - 17788320
Alignment:
Q  141 ttactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatca 206  Q
    ||||||| ||||||  |||||||||||||||  |||  ||||||||||||||| ||||||||||||    
T  17788385 ttactcaccttcaaatattcaaattcattgcgaaattttaaaataggcaaaatcctagtaaaatca 17788320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 26879169 - 26879250
Alignment:
Q  153 aacgattcaaattcattgcagaatcctaaaatagg--caaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaa 232  Q
    |||||||||||||||  ||| |||| ||||||| |  ||||| |||||||||||| ||||||| | |||||||||| |||||    
T  26879169 aacgattcaaattcacagcaaaatcttaaaatacgtgcaaaactctagtaaaatcgcatcaaaattgcacaaaatcgtgaaa 26879250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 1018337 - 1018280
Alignment:
Q  145 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaa 202  Q
    ||||||||||||||||||||||||| || ||| |||||  || |||| ||||||||||    
T  1018337 tcatcttcaacgattcaaattcattacaaaattctaaagcagacaaatttctagtaaa 1018280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 16751932 - 16751992
Alignment:
Q  208 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 269  Q
    |||||| |||||||||||| |||||||||| |||||| ||||||||||   |||||||||||    
T  16751932 atcaaaatcgcacaaaatc-tgaaatccattcaaaatcgcaggattttgatggattttgaag 16751992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 32424394 - 32424435
Alignment:
Q  153 aacgattcaaattcattgcagaatcctaaaataggcaaaatt 194  Q
    |||||||||||||||| | ||||||||||||||| |||||||    
T  32424394 aacgattcaaattcatagtagaatcctaaaatagacaaaatt 32424435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 3094324 - 3094280
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaat 193  Q
    ||||||||| |||||| ||| | ||||||||||||||||||||||    
T  3094324 cttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 3094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 3041189 - 3041244
Alignment:
Q  200 aaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 255  Q
    ||||||| |||||| |||||||||||| |||||||||| |||||| ||||||||||    
T  3041189 aaaatcatatcaaaatcgcacaaaatcgtgaaatccattcaaaatcgcaggatttt 3041244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 22970725 - 22970772
Alignment:
Q  208 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 255  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  22970725 atcaaaatcgcacaaaatcatgaaatccattcaaaatcgcaggatttt 22970772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 28135790 - 28135844
Alignment:
Q  159 tcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 213  Q
    |||||| ||| ||| ||| || |||||||||||||||||||||||||||||||||    
T  28135790 tcaaatccatagcaaaattctcaaataggcaaaattctagtaaaatcacatcaaa 28135844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 10873017 - 10872961
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatc 205  Q
    ||||||||| |||||| ||| ||||||||  |||||||||||||| |||||||||||    
T  10873017 cttcaacgactcaaatccatagcagaatctcaaaataggcaaaatcctagtaaaatc 10872961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 17796431 - 17796477
Alignment:
Q  145 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaa 191  Q
    ||||||||||| | |||||||||| ||||||||||||||||| ||||    
T  17796431 tcatcttcaacaactcaaattcatagcagaatcctaaaatagacaaa 17796477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 19104871 - 19104917
Alignment:
Q  145 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaa 191  Q
    ||||||||||| | |||||||||| ||||||||||||||||| ||||    
T  19104871 tcatcttcaacaactcaaattcatagcagaatcctaaaatagacaaa 19104917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 15806522 - 15806482
Alignment:
Q  215 tcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 255  Q
    |||||||||||| |||||||||| |||||| ||||||||||    
T  15806522 tcgcacaaaatcgtgaaatccatacaaaatcgcaggatttt 15806482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 15806577 - 15806521
Alignment:
Q  149 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatc 205  Q
    |||||| || |||||| ||| ||||||||| |||| ||||||||| |||||||||||    
T  15806577 cttcaatgactcaaatccatagcagaatcccaaaacaggcaaaatcctagtaaaatc 15806521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 17796605 - 17796641
Alignment:
Q  220 caaaatcatgaaatccatgcaaaattgcaggatttta 256  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  17796605 caaaatcgtgaaatccatacaaaattgcaggatttta 17796641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 19105045 - 19105081
Alignment:
Q  220 caaaatcatgaaatccatgcaaaattgcaggatttta 256  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  19105045 caaaatcgtgaaatccatacaaaattgcaggatttta 19105081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 26234879 - 26234983
Alignment:
Q  151 tcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcagg 250  Q
    ||||| ||| |||| ||| ||||||||  ||||||| ||||||  || ||||||   |||||| |||||||||||  | |||| |||||||||| |||||    
T  26234879 tcaacaatttaaatccatagcagaatctaaaaatagacaaaatcttaataaaattgtatcaaaatcgcacaaaattgtaaaattcatgcaaaatcgcagg 26234978  T
Q  251 atttt 255  Q
    |||||    
T  26234979 atttt 26234983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 15445849 - 15445907
Alignment:
Q  196 tagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattt 254  Q
    |||||||||  ||||||| ||||||||||||||||||| |||| |||||| ||||||||    
T  15445849 tagtaaaatagcatcaaaatcgcacaaaatcatgaaattcatgtaaaatttcaggattt 15445907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 13350106 - 13350037
Alignment:
Q  174 aatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaa 243  Q
    ||||| |||| || ||||| |||||||||||||||||||| ||||||||| |  |||||||| |||||||    
T  13350106 aatccaaaaacagacaaaactctagtaaaatcacatcaaaatcgcacaaagttgtgaaatccttgcaaaa 13350037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 4289918 - 4289979
Alignment:
Q  208 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 269  Q
    |||||| |||||||||||| |||||||| | |||||| ||||||||||   |||||||||||    
T  4289918 atcaaaatcgcacaaaatcgtgaaatccgttcaaaatcgcaggattttgatggattttgaag 4289979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 24299 - 24357
Alignment:
Q  208 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttg 266  Q
    |||||| |||||||||||| |||||||||| ||||||  ||||||||||  ||||||||    
T  24299 atcaaaatcgcacaaaatcgtgaaatccattcaaaatcacaggattttaatggattttg 24357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 5623 - 5562
Alignment:
Q  208 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 269  Q
    |||||| |||||||||||| | |||||| | |||||||| |||||||||  |||||||||||    
T  5623 atcaaaatcgcacaaaatcgtaaaatccgttcaaaattgtaggattttaaaggattttgaag 5562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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