View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21296_high_3 (Length: 511)
Name: NF21296_high_3
Description: NF21296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21296_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 41477301 - 41476803
Alignment:
| Q |
1 |
ccaaagacatcattttttcatcagccttttgttgctcttctattgccatctcattctgtaaacaacaagatgaagaacagatttaatccatcataagtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41477301 |
ccaaagacatcattttttcatcagccttttgttgctcttctattgccatctcattctgtaaacaacaagatgaagaacagatttaatccatcataagtta |
41477202 |
T |
|
| Q |
101 |
ttaaaaaataagagggattggtgtacgtaatttgacacaaaagaccaaatggtccatcgagtaaggaatgctaacgacactttttgtgattggtccattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41477201 |
ttaaaaaataagagggattggtgtacgcaatttgacacaaaagaccaaatggtccattgagtaaggaatgctaacgacactttttgtgattggtccattt |
41477102 |
T |
|
| Q |
201 |
ttaaagaagcaaatttagttctccagtaaattgatcactttcaaagaaatgtgttaaatttttaagaaatagacatatcagaaaaagtgtgttcaagaga |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41477101 |
ttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagtaatgtgttatatttttaagaaatagacctatcagaaaaagtgtgttcaagaga |
41477002 |
T |
|
| Q |
301 |
gggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttgtttctctc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41477001 |
gggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttgtttctctc |
41476902 |
T |
|
| Q |
401 |
attgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcatgatcctt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41476901 |
attgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcatgatcctt |
41476803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 40751556 - 40751052
Alignment:
| Q |
1 |
ccaaagacatcattttttcatcagccttttgttgctcttctattgccatctcattctgtaaacaacaagatgaagaacagatttaatccatcataagtta |
100 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
40751556 |
ccaaatacatcattttttcatcagctttttgttgctctgttattgccatctcattctgtaaacaacaagatgaagaacagttttaatccgtcataagtta |
40751457 |
T |
|
| Q |
101 |
ttaaaaaataagagggattggtgtacgtaatttgacacaaaagaccaaatggtccatcgagtaaggaatgctaacgacactttttgtgattggtccattt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
40751456 |
ttaaaaaataagaggaattggtgtacgtaatttgatccaaaagaccaaatggtccatagagtaaggaatgataacaacactttttgtgattggtccattt |
40751357 |
T |
|
| Q |
201 |
ttaaagaagcaaatttagttctccagtaaattgatcactttcaaagaaatgtgttaaatttttaagaaatagacatatca-gaaaaagtgtgttcaagag |
299 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||| ||||||||||||| ||||| |
|
|
| T |
40751356 |
ttaaagaagccaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaatttt-agaaacagac-tatcaggaaaaagtgtgtttaagag |
40751259 |
T |
|
| Q |
300 |
aggg-------ttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttg |
392 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
40751258 |
agggttaaaacttaaaaggagagaattattcatctagcattgctaccataaattcaaagagccaaaatacattacatgtttcttctcaaaatatagcttg |
40751159 |
T |
|
| Q |
393 |
tttctctcattgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcat |
492 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||||||| |||| | | |||||| |
|
|
| T |
40751158 |
gttctctcattgtgattatctgcttgacgcttctgtagatccttctcacgggacataagttcattcctccgagcttccagttccagcctggatttttcat |
40751059 |
T |
|
| Q |
493 |
gatcctt |
499 |
Q |
| |
|
||||||| |
|
|
| T |
40751058 |
gatcctt |
40751052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 107 - 499
Target Start/End: Complemental strand, 41484232 - 41483846
Alignment:
| Q |
107 |
aataagagggattggtgtacgtaatttgacacaaaagaccaaatggtccatcgagtaaggaatgctaacgacactttttgtgattggtccatttttaaag |
206 |
Q |
| |
|
|||| |||||||||||| | || |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41484232 |
aatatgagggattggtgcaaacaaattgacacagaagaccaaatggta----gagtaaggaatgctaacaacactttttgtgattggtccatttttaaag |
41484137 |
T |
|
| Q |
207 |
aagcaaatttagttctccagtaaattgatcactttcaaagaaatgtgttaaatttttaagaaatagacatatcagaaaaagtgtgttcaagagagggtta |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| |||| ||||||||| |||||||||| |
|
|
| T |
41484136 |
aagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaatttta-gaaattgacctatcacaaaa-gtgtgttcatgagagggtta |
41484039 |
T |
|
| Q |
307 |
aaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttgtttctctcattgag |
406 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| | |||||||| ||||||||||||| || |||||||| |||||||||| | |||||||| | |
|
|
| T |
41484038 |
aaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtg |
41483939 |
T |
|
| Q |
407 |
attatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcatgatcctt |
499 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||||||| |||| || |||||||||| |||||||||| |||| ||| ||||||||||||| |
|
|
| T |
41483938 |
attatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
41483846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 41470419 - 41470247
Alignment:
| Q |
1 |
ccaaagacatcattttttcatcagccttttgttgctcttctattgccatctcattctgtaaacaacaagatgaagaacagatttaatccatcataagtta |
100 |
Q |
| |
|
||||| |||||||||||||||| ||| | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
41470419 |
ccaaatacatcattttttcatcggccctgtgttgctctgctattgccatgtcattctgtaaacaacaagatgaagaacagatttaattcgtcctaagtta |
41470320 |
T |
|
| Q |
101 |
ttaaaaaataagagggattggtgtacgtaatttgacacaaaagaccaaatggtccatcgagtaaggaatgctaac |
175 |
Q |
| |
|
|| |||||||||||||||||||| | ||||||||||||||||||| |||||||||| || |||||||||||||| |
|
|
| T |
41470319 |
tt--aaaataagagggattggtgtgcataatttgacacaaaagaccgaatggtccatagattaaggaatgctaac |
41470247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 179 - 474
Target Start/End: Complemental strand, 41470107 - 41469816
Alignment:
| Q |
179 |
actttttgtgattggtccatttttaaagaagcaaatttagttctccagtaaattgatcactttcaaagaaatgtgttaaatttttaagaaatagacatat |
278 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||| ||||| |||| ||||||||| ||||||||| ||||||||| ||||| ||| |
|
|
| T |
41470107 |
actttttgtgattggtccacttttaaagaagccgatttagttct---gtaaaatgatgactttcaaa-aaatgtgttgggattttaagaagtagacctat |
41470012 |
T |
|
| Q |
279 |
cagaaaaagtgtgttcaagagagggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttct |
378 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||| | |||||| |||| | ||||||| | ||| |
|
|
| T |
41470011 |
cagaaaaagtgtgttcaagagagcattaaaaagagataattactcatttagcattgctaccataaatccgaagagctaaaagaaattacatggcccgtct |
41469912 |
T |
|
| Q |
379 |
caagatatagcttgtttctctcattgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagtt |
474 |
Q |
| |
|
|| |||| |||| |||||||| || ||||||| |||||| ||||||||||||||||||||| ||| |||| ||||||||||||| ||| |||| |
|
|
| T |
41469911 |
gaaaatattgcttatttctctcgatgtaattatcttcttgacccttctgcagatccttttcacgtgacataagctcattcctccgagcttctagtt |
41469816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 41484301 - 41484231
Alignment:
| Q |
7 |
acatcattttttcatcagccttttgttgctcttctattgccatctcattctgtaaacaacaagatgaagaa |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41484301 |
acatcattttttcatcagccttttgttgctcctctattgccatctcattctgtaaacaacaagatgaagaa |
41484231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 331 - 499
Target Start/End: Complemental strand, 52472101 - 52471933
Alignment:
| Q |
331 |
attgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttgtttctctcattgagattatctgcttgacgcttctgcag |
430 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||| | |||| |||||||||||||||| || ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
52472101 |
attgctaccataaaatcgaagagccaaaataaattacctgtttcctctcaagatatagcttattgctctcattgtcattatctacttgacgcttctgcag |
52472002 |
T |
|
| Q |
431 |
atccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcatgatcctt |
499 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| || |||||||||| | | ||| ||||||||||||| |
|
|
| T |
52472001 |
atccatttcacgggacataagttcattcctcctagcttccagttccaacatggctttttcatgatcctt |
52471933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 177 - 476
Target Start/End: Original strand, 16413106 - 16413387
Alignment:
| Q |
177 |
acactttttgtgattggtccatttttaaagaagcaaatttagttctccagtaaatt-gatcactttcaaagaaatgtgttaaatttttaagaaatagaca |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||| ||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
16413106 |
acactttttgtgattggtccacttttaaagaagccgatttagttct---gtaaatttgatgactttcaaa-aaatgtgctaagattttaagaaatagacc |
16413201 |
T |
|
| Q |
276 |
tatcagaaaaagtgtgttcaagagagggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttct |
375 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||| |||||| ||||||| ||| |
|
|
| T |
16413202 |
tatcaaaaaaagtgtgttcaagagag--------------aattactc-tttagcattgctaccataaattcaaagagctaaaataaattacatgttttg |
16413286 |
T |
|
| Q |
376 |
tctcaagatatagcttgtttctctcattgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttc |
475 |
Q |
| |
|
| | || ||||||||| |||||| || || |||||||| |||| |||||||||||||||||||| || || |||||||||||||| | | ||||||||| |
|
|
| T |
16413287 |
tttgaaaatatagcttatttctcacaatgtgattatcttcttgtcgcttctgcagatccttttctcgtaacataagttcattcctcagcgcttccagttc |
16413386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 363 - 499
Target Start/End: Original strand, 16408850 - 16408986
Alignment:
| Q |
363 |
attacatttttcttctcaagatatagcttgtttctctcattgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctcc |
462 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
16408850 |
attacatgtttcttctcaagatatagcttatttctctcattgtgattatctgcttgacgcttctgcagatccttttcacgggacataagctcatttttcc |
16408949 |
T |
|
| Q |
463 |
gagtttccagttcctgcctagctatttcatgatcctt |
499 |
Q |
| |
|
|| ||| |||||| |||| ||| ||||||||||||| |
|
|
| T |
16408950 |
aagcttctagttccagcctggctttttcatgatcctt |
16408986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 52472324 - 52472245
Alignment:
| Q |
8 |
catcattttttcatcagccttttgttgctcttctattgccatctcattctgtaaacaacaagatgaagaacagatttaat |
87 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52472324 |
catcattttttcatcggcctttcgttgctcttcaattgccatctcattctgtaaacaacaagatgaagaacatatttaat |
52472245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 16408417 - 16408523
Alignment:
| Q |
8 |
catcattttttcatcagccttttgttgctcttctattgccatctcattctgtaaacaacaagatgaagaacagatttaatccatcataagttattaaaaa |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| || || ||| |
|
|
| T |
16408417 |
catcattttttcatcggccttttgttgctcggctattgccatctcattctgta---aacaagatgaagaatagattcaatccatcataaattgtt--aaa |
16408511 |
T |
|
| Q |
108 |
ataagagggatt |
119 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16408512 |
ataagagggatt |
16408523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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