View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21296_high_6 (Length: 334)
Name: NF21296_high_6
Description: NF21296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21296_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 9643157 - 9642849
Alignment:
| Q |
17 |
cacagagaaagctgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaagattttaggacttttt |
116 |
Q |
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| T |
9643157 |
cacagagaaagctgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaaaattttaggacttttt |
9643058 |
T |
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| Q |
117 |
ggattgttaggttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9643057 |
ggattgttaggttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaa |
9642958 |
T |
|
| Q |
217 |
tgttttgtgatagagccatttgagcagcccattgaacatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagc |
316 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9642957 |
tgttttgtgctagagccatctgagcagcccattgaacatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagc |
9642858 |
T |
|
| Q |
317 |
tagaataat |
325 |
Q |
| |
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||||||||| |
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| T |
9642857 |
tagaataat |
9642849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 25 - 325
Target Start/End: Complemental strand, 10545095 - 10544795
Alignment:
| Q |
25 |
aagctgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaagattttaggactttttggattgtt |
124 |
Q |
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| T |
10545095 |
aagctgaatcttcagcagttctatgtggagctctttcaccccatttttgaaaccatccaatccaattttcagtgaacatttttggactttttgggttatt |
10544996 |
T |
|
| Q |
125 |
aggttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgt |
224 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| || |||||| |
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| T |
10544995 |
aggtttaaaattgtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgt |
10544896 |
T |
|
| Q |
225 |
gatagagccatttgagcagcccattgaacatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctagaataa |
324 |
Q |
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| || |||||||||||||||||||| || |||||| ||||| | |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
10544895 |
gctaaagccatttgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataa |
10544796 |
T |
|
| Q |
325 |
t |
325 |
Q |
| |
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| |
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|
| T |
10544795 |
t |
10544795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 278930 - 278720
Alignment:
| Q |
27 |
gctgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaagattttaggactttttggattgttag |
126 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||| || || || |||||||| ||||| |||||||| | |
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| T |
278930 |
gctgaatcttcagctgttctatgtggcctcctttcaccccatttttggaaccagccaacccaattctctgtaaatattttagggcttttaggattgtttg |
278831 |
T |
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| Q |
127 |
gttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtga |
226 |
Q |
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| | ||| ||| ||||||||| |||||||| |||| ||| |||| ||||||| || ||| | |||||||||||||| |||||||| ||||| | |
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| T |
278830 |
gcttgaaagtgtcacaataatagccattgcatgtatcgataatagtggctggagcatttttttgcttgcacatgatccatgggacaccaatattttgagc |
278731 |
T |
|
| Q |
227 |
tagagccattt |
237 |
Q |
| |
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|| |||||||| |
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| T |
278730 |
taaagccattt |
278720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 18584494 - 18584445
Alignment:
| Q |
171 |
ggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgtt |
220 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| || |||||||| |
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| T |
18584494 |
ggttgaggagcatcaggttgttggcacatgatccatgggactccaatgtt |
18584445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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